Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1551 ATGAAGGGTAATTGCTTTTTATCTATTTTCTATTGTTTTTTAATTGATTTGCTTGTGCTACAACAGGCAGCAACTGGAAATGGATCAAATGCTAGATTGAAGAATGGAGAGATAAAGTTAAGAGTAAGGGTACCCATGAGAGATGGTTTCCCCCAATTTGTGAATGTAGTTTGGGACCCTTCTCAACAAAACTACACCGTTTCTGGATATTGCATGGATGTTTTCTATGCCGTTGTAACCCGCTTACCCTTCAATGTTTCTCTACATATTGTACCTTTTGTTGTTGAATCAAACCAGGTTTCTAGAAGACGCCATGCAATTCTAAAACAAATGTCGACAGAGAGCGAAGTTGTGGTAGGAGATTTAACGATCCGGGCCAACCGTTCAAACTACGTAGATTTCACGGTGCCATATACTGGATCGGGAGTTAAAATGGTAGTACCAGTTCAACATGGGAGGGATCAAAACATGTGGACTTTTGTCAAACCCTTCAGTTGGGATCTTTGGTTGAGAATAATCATCATCTCTACCTTCATAGGGCTTGCCATACTCATCATGGAAAGAAATGTAAGCGCGCTGCCTAATCAAGAGGGTTCTCCAAATCAGAAAAAGCTTTGCCCTGCAACCATCTTATTGTTTCCAATCTCACAAGCCATTCTTCCTGAAAAACAAGTAGTGGTTAAAAGCTGGTCAAGATTTGTGCTGATGGTTTGGCTTCTGTTGGCGTTGGTCCTCATGCAAAGTTACACTGCCAACTTGACTTCTATATTGACCTTGGATCAACTGCGACCCAGTTTTCAGAACGTTAATGATCTAAGGAGAGGGGGTTATTACGTTGGATACCAGTCTGGGTCTTATGTTTACGATGTTCTGATTGACCAATTTAAGTTTGACCCGTCCAAACTAAGGCCATATAGCAACATTACTGAGTACTATGATTCTCTAAAGCTTGGAAGCAAAAATGGGGGTGTTGCAGCTATATTCGATGAAGTGCCCTACCTTAAACTCTACCTTAAAGAATACGGATCCAATTATATTTTGGCTGGCCCCGAATATAGAAATGCTGGGTTTGGTTTTGCATTCCCTTTAAACTCCAATCTCACGGCTTACTTTTCGAGAGGCATCCTGAATGTGATTGAAAGTGGAATAATGAATGAGATCGAGGAAAAATATTTTGGAAAGAATGAGATTGGAGGAGAAGACTCGTCTGCGGAAATATCTTCTGCTCCTCTCAGTCTCAGCTTTCATAGCTTCGCGGGGCTTTTCATTATTGCTGGGATTTCTACTTTGTTAGCGTTGTTGATTTCAGAAAGATTTATTTGCCAAAGACTCATTTTGACGGCTAAAGCATTCACTCAGAGGTATGTCCCCCATTTTTCCAATCCAGTTCAAGATTCAACTCACGGAACAGTGGCTTAA 1419 0.408 MKGNCFLSIFYCFLIDLLVLQQAATGNGSNARLKNGEIKLRVRVPMRDGFPQFVNVVWDPSQQNYTVSGYCMDVFYAVVTRLPFNVSLHIVPFVVESNQVSRRRHAILKQMSTESEVVVGDLTIRANRSNYVDFTVPYTGSGVKMVVPVQHGRDQNMWTFVKPFSWDLWLRIIIISTFIGLAILIMERNVSALPNQEGSPNQKKLCPATILLFPISQAILPEKQVVVKSWSRFVLMVWLLLALVLMQSYTANLTSILTLDQLRPSFQNVNDLRRGGYYVGYQSGSYVYDVLIDQFKFDPSKLRPYSNITEYYDSLKLGSKNGGVAAIFDEVPYLKLYLKEYGSNYILAGPEYRNAGFGFAFPLNSNLTAYFSRGILNVIESGIMNEIEEKYFGKNEIGGEDSSAEISSAPLSLSFHSFAGLFIIAGISTLLALLISERFICQRLILTAKAFTQRYVPHFSNPVQDSTHGTVA* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1551 472 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 4 462 - -
Pvu3g1551 472 CDD GluR_Plant 39 392 - -
Pvu3g1551 472 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 4 462 - -
Pvu3g1551 472 Pfam Ligand-gated ion channel 395 427 IPR001320 GO:0015276|GO:0016020
Pvu3g1551 472 Gene3D - 158 292 - -
Pvu3g1551 472 SUPERFAMILY Periplasmic binding protein-like II 10 395 - -
Pvu3g1551 472 Gene3D - 34 157 - -
Pvu3g1551 472 SMART GluR_14 39 394 IPR001320 GO:0015276|GO:0016020
Pvu3g1551 472 Pfam Bacterial extracellular solute-binding proteins, family 3 64 394 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1551 Pvu-Chr3 35140756 35142803 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1551 39 462 Ion Channels AT5G11210 35.529 8.56e-82 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1551 K05387 - gmx:100807817 609.372