Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1550 ATGAAGGATAAGTGTTTTTTTTCTATTTTCTATTGGTTTTTAATTGTTTTGCTTGTGCTACTACAGTCACCAACTGTAAATGGATCAAATGGTAGATTGAAGAATGGAGAGATAAAGTTAAGAGTAACGGTACCCATTCATGGTTTCCCCCAATTTGTGTATGTAGTTTGGGACCCTTCTCAACAAAAGTACACCGTTTCTGGATATTGCATGGATGTTTTCTATGCCGTTGTGACCCGCTTACCCTTCAATGTTTCTCTACATATTGTACCTTCTGCTGTTGAATTAAACCAGGTTTCTAGAAGACACCATGCAATTCTAAAACAAATGTCGACAGAGAGCGAAGTTGTGGTAGGAGATTTCACGATCCGGGCCAACCGTTCAAACTACGTAGATTTCACGGTGCCATATACTGCATCGGGAGTTAAAATGGTAGTACCAGTTCAACATGGGAGGGATCAAAACATGTGGACTTTTGTCAAACCCTTCAGTTGGGATCTTTGGTTGAGCATAATCATCATCTCTACCTTCATAGGGCTTGCCATACTCATCATGGAAAGAAATGTAAGCGCGCTGCCTAATCAAGAGGGTTCTCCAAATCAGAAAAAGCTTTGCCCTGCAACCATCTTATGGTTTCCAATCTCACAAGCCATTCTTCCTGAAAGACAAGTTGTGGTAAAAAGCTGCTCAAGATTTGTGCTGATGGTTTGGCTTCTATTGGCGTTCGTCCTCATGCAAAGCTACACTGCTAACTTGACTTCTATATTGACCTTGGATCAACTGCAACCCAGCTTTCTCAACGCAAATGACTTAAGAAAAGGGGGTTATTTCGTTGGATACCAAACGGGGTCTTTCGTTCAGGATGTGTTGGTTAAGCAATTTAAGTTTGACCCATCAAAACTGAAGCCATATAACAGCAGTTCCGAGTATCATGAAGCTCTAAAGCTTGGAAGCGAAAATGGGGGTGTTGCAGCTATATTCGATGAAGTGCCCTACCTTAAACTCTACATTCAAGAATACGGATCCAATTACATTATGGCTGGCCCCAAATATAGAAATGCTGGGTTTGGTTTTGCACTCACTTTAAACTCGAATCTCACGGCTTGCTTTTCGAGAGCCATCTTGGATGTGACTGAAAGTGATTTAATGAATGAAATTGAGGAAAAATATTTTGGGAAGAATGATATTGGACAAGACTCGTCTGGGGAAGTATCTTCTGCTCCTCTCAGTCTCAGCTTTCATAGCTTTGCGGGGCTCTTTATGATTACTGGTATTTCAACTTTGTTTGCGCTATTGATCTCAGAAAGTGTTATATGGCAAAAGCCCATTTTGATGGCTAAAGCATTGAGTCAAAGGTACTTGTCCTTCAAGCCATCTTCCACGGAAATACGCGTTCATCCAACTCATGATTCAACTATCGGTATAGAGATCGTTTAG 1437 0.4099 MKDKCFFSIFYWFLIVLLVLLQSPTVNGSNGRLKNGEIKLRVTVPIHGFPQFVYVVWDPSQQKYTVSGYCMDVFYAVVTRLPFNVSLHIVPSAVELNQVSRRHHAILKQMSTESEVVVGDFTIRANRSNYVDFTVPYTASGVKMVVPVQHGRDQNMWTFVKPFSWDLWLSIIIISTFIGLAILIMERNVSALPNQEGSPNQKKLCPATILWFPISQAILPERQVVVKSCSRFVLMVWLLLAFVLMQSYTANLTSILTLDQLQPSFLNANDLRKGGYFVGYQTGSFVQDVLVKQFKFDPSKLKPYNSSSEYHEALKLGSENGGVAAIFDEVPYLKLYIQEYGSNYIMAGPKYRNAGFGFALTLNSNLTACFSRAILDVTESDLMNEIEEKYFGKNDIGQDSSGEVSSAPLSLSFHSFAGLFMITGISTLFALLISESVIWQKPILMAKALSQRYLSFKPSSTEIRVHPTHDSTIGIEIV* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1550 478 Gene3D - 157 294 - -
Pvu3g1550 478 Pfam Ligand-gated ion channel 394 425 IPR001320 GO:0015276|GO:0016020
Pvu3g1550 478 Pfam Bacterial extracellular solute-binding proteins, family 3 65 393 IPR001638 -
Pvu3g1550 478 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 4 474 - -
Pvu3g1550 478 SMART GluR_14 41 393 IPR001320 GO:0015276|GO:0016020
Pvu3g1550 478 Gene3D - 34 156 - -
Pvu3g1550 478 SUPERFAMILY Periplasmic binding protein-like II 12 394 - -
Pvu3g1550 478 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 4 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1550 Pvu-Chr3 35110744 35112723 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1550 35 441 Ion Channels AT2G29110 40.471 3.84e-83 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1550 K05387 - gmx:100811144 657.907