Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1547 ATGGGATCCTCATTCAGTTGCTGTGTCTCAGAGAGGGTCGACGAAGTGTCCACATCATTTGGCGTAGTTAACAATTCATGGAGAATATTCACGTACAAGGAATTGCATGCGGCTACCAACGGATTCAGCGATGATAACAAGCTTGGAGAAGGTGGTTTTGGAAGTGTGTACTGGGGAAGAACCAGTGATGGTCTTCAGATAGCGGTAAAGAAACTGAAAGCAATGAACTCAAAGGCGGAGATGGAATTTGCTGTAGAAGTTGAAGTTCTTGGAAGGGTTAGGCACAAAAACTTGCTGGGTCTTAGGGGCTATTGTGTTGGGGATGATCAACGGCTCATAGTGTATGATTACATGCCAAATCTCAGCCTGATTTCTCATCTCCATGGCCAGTTTGCTGTTGAAGTTGAACTCAACTGGCAAAGGAGAATGAACATTGCAATTGGTTCTGCAGAAGGCCTTCTGTACTTGCACCGTGAGGTCACACCCCACATCATCCACAGGGACGTAAAAGCAAGTAACGTGCTTCTGAATTCAGAGTTTGAGCCTCTAGTTGCGGATTTTGGGTTTGCAAAACTAATCCCAGAAGGGGTTAGTCATATGACTACCCGTGTGAAGGGTACGTTGGGATACTTGGCTCCTGAATATGCGATGTGGGGTAAGGTCTCGGAAAGTTGTGATGTCTATAGCTTTGGAATTTTGCTCTTGGAACTTATAAGTGGAAGAAAGCCCATAGAGAAGCTCCCTGGTGGGCTTAAGAGAACAATAACTGAGTGGGCCGAGCCTCTAATAAGCAGAGGAAAGTTCAGGGAGCTGGTTGATCCAAAACTGAGAGGGAACTTTGATGAAAAGCAATTGAAACAAGCAATCAATGTGGCTGCTCTTTGCGTGCAGAGTGAGCCCGAGAAACGACCCAACATGAAGCAAGTGGTTAACCTTCTTAAAGGGTATGAATCTGAAGAGAAGAAAGTGAGTGTGACGAGGATAGACAGTATCAAGTATAATGAAGAACTATTGGCACTTGATCAGCCTAGTGATGAAGAACCTGATGATGCAAGCGCTAGTTATGGTGTTTTCAGCGCCATTGAAGTCCAAAACATGAAGGATCCATATAAGCCCGGTTATTACAAGAACATCGCCTAA 1140 0.4482 MGSSFSCCVSERVDEVSTSFGVVNNSWRIFTYKELHAATNGFSDDNKLGEGGFGSVYWGRTSDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCVGDDQRLIVYDYMPNLSLISHLHGQFAVEVELNWQRRMNIAIGSAEGLLYLHREVTPHIIHRDVKASNVLLNSEFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELISGRKPIEKLPGGLKRTITEWAEPLISRGKFRELVDPKLRGNFDEKQLKQAINVAALCVQSEPEKRPNMKQVVNLLKGYESEEKKVSVTRIDSIKYNEELLALDQPSDEEPDDASASYGVFSAIEVQNMKDPYKPGYYKNIA* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1547 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Pvu3g1547 379 PANTHER OS01G0750732 PROTEIN 1 372 - -
Pvu3g1547 379 Gene3D Phosphorylase Kinase; domain 1 14 117 - -
Pvu3g1547 379 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Pvu3g1547 379 SUPERFAMILY Protein kinase-like (PK-like) 26 320 IPR011009 -
Pvu3g1547 379 CDD STKc_IRAK 48 315 - -
Pvu3g1547 379 Pfam Protein tyrosine and serine/threonine kinase 45 313 IPR001245 GO:0004672|GO:0006468
Pvu3g1547 379 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 1 372 - -
Pvu3g1547 379 ProSiteProfiles Protein kinase domain profile. 42 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1547 379 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1547 379 Gene3D Transferase(Phosphotransferase) domain 1 118 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1547 Pvu-Chr3 35049110 35050782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1547 22 340 Trihelix Transcription Factor Family AT1G70460 46.505 2.73e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Pvu3g1547 PK_Tyr_Ser-Thr 1.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1547 - - gmx:100783365 692.575