Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1546 ATGGTACTTCCCTCCCCTGCCAAAATACTCATTGGCCTCTCCTTAGACCCAGATGACAGCAAGGAGCTTCTCTCATGGGCAATAAGAGTTCTAGCCAATCCAAATGACACCATTGTGGCTGTGCATGTGCTTGTTAATGCGGATAAGAAGAAGCGAGTCTCCGTCAGAAAAAGGCAATCACAACTGAGACAAGCAAAAGCAAACGTTATATCTGTGCTTGGAGAATTTGCACAGACCTGTTGGTCTAAGCAGGTTAATTTGGAGGCAAGGGTGGCACTCAATTCCACAGTTGGTGGAGGTTTATCGGAGGAAACCAAGTCCATCAATGCTGACTTTCTTCTTATTCGTGGCTCAAGAAACCAAACTAATAAAATTGGAACTTCCAAAGGAATTACAGGGTATTGCTTTGAGCATGCGCATGAAGGGTGTACAATAGTCTCAGTTGGAAGACGTAGGAAGGCAGATCAAAGTGTCAAGCCAAACTCAGTTCATTTTCAAGATAACAAACAACCAAATTCAAGAAGGTTTAAGAAGGAAAAGCAATGTGATAAGGGTGTCTCCCCTGTTCTGGAGGATTATATCACAGGAATCAAGGCTCAGAACCGTTCACCAAGAACAGTACTAAATAGTCTAGAGGGACAATCAAACAGCACAGAAGATGATACCTTTAGCACTAGGGTCTCAAGCACCACGTATACCCCATCATTGGATTCAAAGATTAAGAGCCGATCCAAGATAAAACCACAGTTCTCATTTAGGTTCATAGTCTCATTCCTTGCTTCACCATTTAGAAGGAAAAACTTCAACATTTACGAAAGTGAAAATCGTCAGCCTTTGTTGAAGTGCTTCAGCTATGAACAGATATTCAATGCTACCAACGACTTCCACCAAGATAATTTGGTTGGACGAGGTGGGTATTCGGAAGTATACAAAGGTGATCTTTCAGATGGACGAACCATTGCTGTGAAGAGGTTGGCCAAGGATAACAAGGATCCTAACAAGGAAAAAGAGTTCCTTATGGAATTGGGTGTTATTGGACATGTCTGTCATCCTAATACTGCAACTTTAGTGGGCTGCTGCATTGAAAATGGGCTATATCTGATTTTCAATTACTCTCAAAATGGAAACTTGGCAACTGCATTGCATGGTAAAGGAGGAGATTCACTAGACTGGCCAATCAGGTACAAAATTGCCATTGGTGTTGCAAGGGGTCTCCATTATCTTCACAAATGTTGCAAACACCGAATAATTCACCGTGACATTAAAGCCTCTAATGTTCTTCTTGGTCCTGACTACGAACCACAGATTGCTGATTTTGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACTCACCATGCTGTGATCCCCGTAGAGGGCACGTTTGGATACTTAGCGCCAGAATACTTTATGCATGGAATAGTGGATGAGAAAACAGATGTTTTTGCATTTGGAATTCTACTTTTGGAGATTGTAACTGGACGGAGACCTGTTGATTCATCAAAACAAAACCTTCTCTTATGGGCAAAGCCTCTAATGGAATCAGGGAATATTGCTGAGCTGGCTGATCCAAGAATGGAAGGTAAATATGATGGACTGCAACTGTACAGGGTAGTGCTAGCGGCTTCATACTGTGTGAGACAAACTGCCACGTGGCGTCCCCCAATGAGCGAGGTGTTGGAGCTGCTAACCAGTGGCGAAGACAGTGAGGTTGGAAAAAGCTGGAGGATCCCAAAGTTCACCTCTGATGAATTGGATGATTACTCTATGGTTTTCGGATATGATGTACCCTCAGACCTATCTTTGGAGGATTATTTGTGA 1818 0.4296 MVLPSPAKILIGLSLDPDDSKELLSWAIRVLANPNDTIVAVHVLVNADKKKRVSVRKRQSQLRQAKANVISVLGEFAQTCWSKQVNLEARVALNSTVGGGLSEETKSINADFLLIRGSRNQTNKIGTSKGITGYCFEHAHEGCTIVSVGRRRKADQSVKPNSVHFQDNKQPNSRRFKKEKQCDKGVSPVLEDYITGIKAQNRSPRTVLNSLEGQSNSTEDDTFSTRVSSTTYTPSLDSKIKSRSKIKPQFSFRFIVSFLASPFRRKNFNIYESENRQPLLKCFSYEQIFNATNDFHQDNLVGRGGYSEVYKGDLSDGRTIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHPNTATLVGCCIENGLYLIFNYSQNGNLATALHGKGGDSLDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQIADFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGILLLEIVTGRRPVDSSKQNLLLWAKPLMESGNIAELADPRMEGKYDGLQLYRVVLAASYCVRQTATWRPPMSEVLELLTSGEDSEVGKSWRIPKFTSDELDDYSMVFGYDVPSDLSLEDYL* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1546 605 SUPERFAMILY Protein kinase-like (PK-like) 269 562 IPR011009 -
Pvu3g1546 605 MobiDBLite consensus disorder prediction 156 181 - -
Pvu3g1546 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Pvu3g1546 605 Gene3D Phosphorylase Kinase; domain 1 259 371 - -
Pvu3g1546 605 Gene3D HUPs 4 148 IPR014729 -
Pvu3g1546 605 Pfam Protein kinase domain 295 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1546 605 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Pvu3g1546 605 SMART serkin_6 295 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1546 605 PANTHER OS08G0249100 PROTEIN 6 595 - -
Pvu3g1546 605 PANTHER OS08G0249100 PROTEIN 6 595 - -
Pvu3g1546 605 Gene3D Transferase(Phosphotransferase) domain 1 373 575 - -
Pvu3g1546 605 CDD USP_Like 8 119 - -
Pvu3g1546 605 ProSiteProfiles Protein kinase domain profile. 295 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1546 605 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 6 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1546 Pvu-Chr3 35031024 35034351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1546 283 601 Trihelix Transcription Factor Family AT1G70460 40.653 4.72e-74 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pvu3g1546 Pkinase 3.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1546 - - ccaj:109809416 1106.28