Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1545 ATGGGAATTGAAAGAGGAGGCTTGAAGGGGTTCAGGAGCGGCTGGACCGTGCCGCCAAAGCCATGTGACTCCTGCAAGTTGGCTTCGGCGGCGCTTTTCTGCCGCCCCGATTCCGCTTTTCTCTGCATCGCCTGCGACTCCAAGATTCACTGTGCCAACAAGCTGGCATCGCGCCACGAGCGCGTCTGGGTGTGCGAGGTCTGCGAGCAGGCCCCCGCGGCTGTCACGTGCAAGGCTGACGCCGCCGCCCTCTGCATCACCTGCGACTCTGACATCCACTCTGCCAACCCCCTCGCGCGCCGCCACGACCGCGTCCCTGTTGAGCCCTTCTACGACTCCGCCGACTCCATCGTCAAGGCCTCCACCGCCGCCTCCTTCGGCTTCATCGTCCCCTCCGACGACGCCACCGGAGCCTCCGATGCCTTCGCCCATGACGACCCCGACGCCGCCGCCTGGCTCATCCCCAACCCCAATTTCGGGTCGAAACTCGTGGACGCCACTGACATGAAGTCCAAGGAGATCTTCTACTCAGAAATGGACCCCTTCCTCGATTTCGATTACTCAAACTCCTTCCACAACAACAACTCCGGAAACGACAGCGTCGTTCCAGTTCAAACCAAACCTTCCTTCGCTCCTCCCCTCATCAATAACCACCACCAATCAGAAAGCTGCTTCGACATCGACTTTTGCCGCTCCAAGCTCTCCTCCTTTAACTACCCATCCCAGTCTCTCAGCCAAAGCGTTTCGTCGTCGTCGCTTGATGTTGGAGTGGTGCCGGATGGGAACACCGTGTCGTACTCGTTTGGTCGGAACAGTTCGGAATCGAGTGGGATTGGTTTGTCCGGAGTAAGTGGAGGACAAGGGGCGACGCAGTTGTGTGGAATGGACCGTGAAGCGAGGGTTCTGCGATACAGAGAGAAGAGAAAGAACCGAAAGTTTGAGAAAACCATTCGATACGCATCGCGGAAGGCTTATGCGGAAACCCGGCCCAGGATAAAAGGGCGGTTCGCGAAGCGAACTGAAACTGACTCGGATGTGGAGCGTCTCTATAGCCCTGGCGCTGCGTCGCTGATGCTTGACAGTCCATACGGCGTCGTACCATCGTTTTAG 1110 0.5829 MGIERGGLKGFRSGWTVPPKPCDSCKLASAALFCRPDSAFLCIACDSKIHCANKLASRHERVWVCEVCEQAPAAVTCKADAAALCITCDSDIHSANPLARRHDRVPVEPFYDSADSIVKASTAASFGFIVPSDDATGASDAFAHDDPDAAAWLIPNPNFGSKLVDATDMKSKEIFYSEMDPFLDFDYSNSFHNNNSGNDSVVPVQTKPSFAPPLINNHHQSESCFDIDFCRSKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTVSYSFGRNSSESSGIGLSGVSGGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTETDSDVERLYSPGAASLMLDSPYGVVPSF* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1545 369 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 8 369 - -
Pvu3g1545 369 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Pvu3g1545 369 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Pvu3g1545 369 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 8 369 IPR045281 GO:0009909
Pvu3g1545 369 CDD Bbox1_BBX-like 21 64 - -
Pvu3g1545 369 SMART bboxneu5 17 64 IPR000315 GO:0008270
Pvu3g1545 369 SMART bboxneu5 65 107 IPR000315 GO:0008270
Pvu3g1545 369 Pfam CCT motif 297 339 IPR010402 GO:0005515
Pvu3g1545 369 ProSiteProfiles CCT domain profile. 297 339 IPR010402 GO:0005515
Pvu3g1545 369 CDD Bbox1_BBX-like 64 107 - -
Pvu3g1545 369 Pfam B-box zinc finger 19 61 IPR000315 GO:0008270
Pvu3g1545 369 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1545 Pvu-Chr3 34962576 34964596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1545 1 369 C2C2-CO-like Transcription Factor Family AT5G57660 56.085 5.95e-127 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pvu3g1545 zf-B_box 3.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1545 - - gmx:100805693 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1545 3 34962576 34964596 Pvu3g1545 3 34962576 34964596 ECH