Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1541 ATGGGGTTTGAGAACAAAATTGGGAAGTATCAGCTTGGAAGGACAATTGGAGAAGGTAGTTTCTCTAAGGTTAAGCTAGCTGTCAATGGCAGCAATGGTCAGAAGGTTGCGGTCAAGGTCATTGATAAGCATATGATCCTAGAAAACAATCTTAAGAATCAGGTTAAAAGAGAGATCAGAACAATGAAACTTCTGCATCATCCCAATATAGTTAGAATTCACGAGGTTGTTGCCACAAAAACGAAGATATACATCGTGATGGAATATGTATCAGGAGGACAACTACTAGACAAGTTGTCCTATGGAGAGAAGCTGAATGAACGTGAGGCAAGAAAACTATTCCAGCAACTCATTGATGCCCTGGACTACTGCCATAACAAAGGGGTGTATCATCGAGATCTCAAGCCAGAAAACCTGCTTCTTGACAGCAAGGGAAATCTCAAAGTGTCTGATTTTGGATTAAGTGCACTACAAAAGTGTAATGATGTCTTGACCACGCGGTGTGGATCCCCATGTTATGTAGCACCTGAGCTTCTACTGAGCAAGGGGTATAATGGAGCAGCTGCTGATGTTTGGTCATGCGGGGTGATCCTTTTTGAATTACTTGCAGGCTATTTACCATTTAACGACCAGAACTTGATGAACTTATATGCAAAGATATGGAAGTCAGAATATAAATGTCCCCCATGGTTTACTCGGAGTCAAAGGAAACTAATAGCCAAAATACTTGAACCACGAGCTGCAAAGCGGATAACTATATCAGATATTATTGAAGATCCGTGGTTTCAAACAGATTACAAGCCTGTTTTTGCATCTGAATTTGATCAGAACATTAACTTGGAGGGTGTTGATGTTGCTTTCAATTCAATTGAGGAAAATGTCAGAGAGACAACGGTATCTAAGTCCTCAAGTTTCATTAATGCTTTTCAACTAATAGCCATGTCTCGGGACCTTGATCTATCTGGTCTTTTTGAAGAACAGGATGAAAAAGAGCAGACAAGAAGACTGGGATCCAAACACACTATCAATGAAACGATAGAAAAAATAGAAACTGCTGCAACAAATGTAAGACTGTCAGTAGAGAAAATTAGCAACTTCAAG 1101 0.3987 MGFENKIGKYQLGRTIGEGSFSKVKLAVNGSNGQKVAVKVIDKHMILENNLKNQVKREIRTMKLLHHPNIVRIHEVVATKTKIYIVMEYVSGGQLLDKLSYGEKLNEREARKLFQQLIDALDYCHNKGVYHRDLKPENLLLDSKGNLKVSDFGLSALQKCNDVLTTRCGSPCYVAPELLLSKGYNGAAADVWSCGVILFELLAGYLPFNDQNLMNLYAKIWKSEYKCPPWFTRSQRKLIAKILEPRAAKRITISDIIEDPWFQTDYKPVFASEFDQNINLEGVDVAFNSIEENVRETTVSKSSSFINAFQLIAMSRDLDLSGLFEEQDEKEQTRRLGSKHTINETIEKIETAATNVRLSVEKISNFK 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1541 367 ProSiteProfiles NAF domain profile. 301 325 IPR018451 GO:0007165
Pvu3g1541 367 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 21-RELATED 6 367 - -
Pvu3g1541 367 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Pvu3g1541 367 Pfam Protein kinase domain 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1541 367 Gene3D Kinase associated domain 1, KA1 302 367 - -
Pvu3g1541 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Pvu3g1541 367 PANTHER SERINE/THREONINE KINASE 6 367 - -
Pvu3g1541 367 Gene3D Transferase(Phosphotransferase) domain 1 90 285 - -
Pvu3g1541 367 Pfam NAF domain 304 362 IPR004041 GO:0007165
Pvu3g1541 367 SUPERFAMILY Protein kinase-like (PK-like) 7 272 IPR011009 -
Pvu3g1541 367 SMART serkin_6 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1541 367 ProSiteProfiles Protein kinase domain profile. 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1541 367 CDD CIPK_C 307 367 - -
Pvu3g1541 367 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1541 Pvu-Chr3 34859514 34861502 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1541 6 367 CBL-interacting serine-threonine protein kinases AT2G26980 52.055 1.82e-139 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Pvu3g1541 Pkinase 2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1541 - - pvu:PHAVU_003G1486000 733.021