Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1524 ATGAATTTCCATCCCAATACTTCTCTTCACCTAAGGCAACCGGATGAGATCAATCACCTCAATCTTGATCTTCTTCTTGAGCCATCTTCTTCTTCATCATCTTCTCCTTCACCTATAAGTCCCATTGAGCCGCGGATATTCTCATGCAACTATTGCCAGAGAAAGTTCTATAGCTCTCAAGCGCTAGGGGGTCACCAAAATGCTCACAAGCTTGAGAGGACACTGGCCAAGAAGAGCAGGGAAATGAGTTCAACCATGCAATCTTACGGAACACAGGAGCAAAGATCAAACTTCAGCCCTTCACACCATCTTGGTCGTGCTCTTGGGGTTAACGTTGTGGATGACCAAGGACAAAGTTATGTGAGGCTTGGCGGAAGAAAAGAATACAGTTTTGGACCCAAGGAAGGGATGGCTTCCTGGTCAAGGGGTTATACTTCTGAGCATGTTCAGGAGGATATTGGCCAACTTGACTTGTCGTTGAGGCTTTGA 489 0.4601 MNFHPNTSLHLRQPDEINHLNLDLLLEPSSSSSSSPSPISPIEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREMSSTMQSYGTQEQRSNFSPSHHLGRALGVNVVDDQGQSYVRLGGRKEYSFGPKEGMASWSRGYTSEHVQEDIGQLDLSLRL* 163
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1524 162 PANTHER BNAC02G44440D PROTEIN 1 162 - -
Pvu3g1524 162 Gene3D Classic Zinc Finger 38 103 - -
Pvu3g1524 162 PANTHER ZINC FINGER PROTEIN JAGGED 1 162 IPR045320 GO:0003700
Pvu3g1524 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Pvu3g1524 162 SUPERFAMILY beta-beta-alpha zinc fingers 44 74 IPR036236 -
Pvu3g1524 162 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pvu3g1524 Pvu-Chr3 34662288 34663606 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1524 1 162 C2H2 Transcription Factor Family AT5G57520 47.977 7.21e-30 104
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu3g1524 None None None
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1524 - - vra:106768043 288.115
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1524 3 34662288 34663606 Pvu3g1524 3 34662288 34663606 ECH