LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu3g1524	ATGAATTTCCATCCCAATACTTCTCTTCACCTAAGGCAACCGGATGAGATCAATCACCTCAATCTTGATCTTCTTCTTGAGCCATCTTCTTCTTCATCATCTTCTCCTTCACCTATAAGTCCCATTGAGCCGCGGATATTCTCATGCAACTATTGCCAGAGAAAGTTCTATAGCTCTCAAGCGCTAGGGGGTCACCAAAATGCTCACAAGCTTGAGAGGACACTGGCCAAGAAGAGCAGGGAAATGAGTTCAACCATGCAATCTTACGGAACACAGGAGCAAAGATCAAACTTCAGCCCTTCACACCATCTTGGTCGTGCTCTTGGGGTTAACGTTGTGGATGACCAAGGACAAAGTTATGTGAGGCTTGGCGGAAGAAAAGAATACAGTTTTGGACCCAAGGAAGGGATGGCTTCCTGGTCAAGGGGTTATACTTCTGAGCATGTTCAGGAGGATATTGGCCAACTTGACTTGTCGTTGAGGCTTTGA	489	0.4601	MNFHPNTSLHLRQPDEINHLNLDLLLEPSSSSSSSPSPISPIEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREMSSTMQSYGTQEQRSNFSPSHHLGRALGVNVVDDQGQSYVRLGGRKEYSFGPKEGMASWSRGYTSEHVQEDIGQLDLSLRL*	163

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu3g1524	162	PANTHER	BNAC02G44440D PROTEIN	1	162	-	-
	Pvu3g1524	162	Gene3D	Classic Zinc Finger	38	103	-	-
	Pvu3g1524	162	PANTHER	ZINC FINGER PROTEIN JAGGED	1	162	IPR045320	GO:0003700
	Pvu3g1524	162	ProSiteProfiles	Zinc finger C2H2 type domain profile.	47	74	IPR013087	-
	Pvu3g1524	162	SUPERFAMILY	beta-beta-alpha zinc fingers	44	74	IPR036236	-
	Pvu3g1524	162	ProSitePatterns	Zinc finger C2H2 type domain signature.	49	69	IPR013087	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu3g1524	Pvu-Chr3	34662288	34663606	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu3g1524	1	162	C2H2 Transcription Factor Family	AT5G57520	47.977	7.21e-30	104

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Pvu3g1524		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu3g1524	-		-	vra:106768043	288.115

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu3g1524	3	34662288	34663606	Pvu3g1524	3	34662288	34663606	ECH