Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1505 ATGTATTCGAGTTCGAGTCAGTTCGACGGCAACGCAGCCTTCTCCGGCGGCGGATTTATGCCTTCTCAGGCCACTCAGGGCACTGATCCTTCACTGGGTTTCTCCAAGAATCGCGATGCTCAGTCCTTGCTTCCTCTAACAGTTAAGCAAATATACGATGCGATTCAATCAAGCGATGATAAAGCCAATTTGATTGTTGACGGTGTGGACGTTAATAATGTTACTCTTATAGGAAGAGTGTGCAACAAAGCTGGACGAGTTACTGATGTTACTTTTGTGCTTGATGATGGTACTGGGAAGATTGAGTGTAATAAATGGTTTCAGGAAGCTGCTGATTCAAATGAAGCAGAGTCTATCTTGGACGGAATGTATGCGAGGCTCCATGGACATTTGAAAAACTTTCAGGGTAAAAGGACCTTGAATGTTTTCTATTTCAGGCCTGTGACTGACTTTAACGAGGTTGCTAGTCATTTCATAGATTGCATACATGTGCATCTCTACAATTCCAGGATTCGGAGTAGTGTCCCTAATCAGCAACATGTTATGAATTCTACGCCAATTACTCCCACAATGGGTTATCAAGCTAAAGTTATTCCACCAACAAATCAGTTCTCTGATCAACATGCCATTGGCCAGAAGGGTACTGAAAATATGGTCTTAGATTTTCTGCATCTTCCCGCCAACAGGTCAAGGAATGAGGGAGTCCGTCGTGATCTTATTGCACAGCATCTTGAAATTTCTTTGGATAAGCTCATGCTGGCTATTAAAAACCTTATCGATGAAGGTGCCGTTTATGAAACTATAGCTGATCACTATAAGTCAATCATCAATGGTTGA 837 0.4229 MYSSSSQFDGNAAFSGGGFMPSQATQGTDPSLGFSKNRDAQSLLPLTVKQIYDAIQSSDDKANLIVDGVDVNNVTLIGRVCNKAGRVTDVTFVLDDGTGKIECNKWFQEAADSNEAESILDGMYARLHGHLKNFQGKRTLNVFYFRPVTDFNEVASHFIDCIHVHLYNSRIRSSVPNQQHVMNSTPITPTMGYQAKVIPPTNQFSDQHAIGQKGTENMVLDFLHLPANRSRNEGVRRDLIAQHLEISLDKLMLAIKNLIDEGAVYETIADHYKSIING* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1505 278 CDD RPA2_DBD_D 73 166 - -
Pvu3g1505 278 Gene3D - 35 170 IPR012340 -
Pvu3g1505 278 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 4 274 - -
Pvu3g1505 278 Pfam OB-fold nucleic acid binding domain 74 142 IPR004365 GO:0003676
Pvu3g1505 278 SUPERFAMILY Nucleic acid-binding proteins 43 169 IPR012340 -
Pvu3g1505 278 Coils Coil 241 261 - -
Pvu3g1505 278 Pfam Replication protein A C terminal 165 270 IPR014892 -
Pvu3g1505 278 PANTHER REPLICATION PROTEIN A-RELATED 4 274 IPR040260 -
Pvu3g1505 278 Gene3D - 207 276 IPR036388 -
Pvu3g1505 278 SUPERFAMILY "Winged helix" DNA-binding domain 214 275 IPR036390 -
Pvu3g1505 278 PIRSF RPA32 2 276 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1505 Pvu-Chr3 34322144 34328846 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1505 4 275 Core DNA Replication Machinery Family AT2G24490 44.364 7.32e-79 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1505 K10739 - gmx:100782819 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1505 3 34322144 34328846 Pvu3g1505 3 34322144 34328846 ECH