Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1498 ATGGACTCTTCTGCATCACCGCCAAACAACTCCCTCGCTTTCTCTCTTTCCAATCACTTCCCAAACCCTTCTTCCTCTCACTCTACCTCTCCTCTTTCCCTTTTCCACTCCTTCACCTCTTATCCATCTCTCACCCTCACAGGCACCAACACGGTCGATGCACCACCGGAGCCAGCCGCCGGCGGAGGTTCCACCAACCTCTCCATATTCACCGCTGCTCCCAAGTTCGAGGACTTTCTAGGCGGTTCCGCTGTAGCAGACACCACCGCCACGGGTGCACCGCCACGACTTCCGCAGTTCTCCACCGACAACAACCTATACGATTCGGAGCTGAAGACTACAATAGCCGCGTGCTTCCCTCGCGGCTTCGCGGCCGAACCAACCACCGAACCTCAAAAGCCCTCTCCGAAGAAAACCGTCGACACCTTCGGCCAAAGAACTTCCATCTACCGTGGCGTCACCCGACATAGATGGACTGGAAGATATGAAGCTCATCTATGGGACAATAGCTGTAGAAGGGAAGGACAGAGTAGGAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGATAAGGCAGCTAGAGCTTACGATCTCGCTGCTCTCAAGTACTGGGGTCCAACTACCACCACCAACTTTCCGATTTCCAACTATGAGAAGGAGCTGGTGGAGATGAAGAACATGACCAGGCAAGAGTTTGTGGCTTCTCTACGGAGGAAGAGTAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAGACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACTCAAGAGGAAGCTGCTGAGGCCTATGACATTGCAGCTATCAAATTCAGGGGGCTAAATGCGGTCACAAACTTCGACATGAGTCGCTACGACGTTAAGAGCATTGCAAATAGCACACTTCCCATTGGGGGCTTATCTAGCAAGAACAAAAACTCCGCAGATTCTGCATCTGACAGCAAAAGCCACGAGGCAAGCCGATCCGACGAACGAGATCCATCATCAGCTTCATCCGTAACCTTTGGATCACAGCAGCAGCCTTCTAGCTCTACCTTAAGCTTTGCCATCCCTATCAAACAAGACCCTTCAGATTACTGGTCCATCTTGGGGTACCATAATCCTACACTCGACAACAGTGGAGGCAGGAACACTACTAGTGTTACTACAACTTCTTTTGCATCTTCCAACAACGGCACTGCTGGTGCCACACCCTTCCAAATGGACCTCTCAAGTGCCCCCTCAAGTACCGGCAGTGACAACAATGCCGCGTTTTTCAGTGGAGGAGGCATCTTTGTTCAGCAACAAAGTGGTCATGGTGGTAATGGTCATGGAAATGGAAGCAGTGGTTCTTTAAGCTGTTCAATCCCATTCGCCACGCCCATCTTTTCTCTAAATAGCAATACTAGTTATGAGAGCAGTGCTGGTTACGGGAACTGGATTGGACCTACCCTGCACACATTCCAATCCCATGCAAAACCAAGTCTCTTTCAAACGCCAATATTTGGCATGGAATGA 1581 0.5066 MDSSASPPNNSLAFSLSNHFPNPSSSHSTSPLSLFHSFTSYPSLTLTGTNTVDAPPEPAAGGGSTNLSIFTAAPKFEDFLGGSAVADTTATGAPPRLPQFSTDNNLYDSELKTTIAACFPRGFAAEPTTEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELVEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSSKNKNSADSASDSKSHEASRSDERDPSSASSVTFGSQQQPSSSTLSFAIPIKQDPSDYWSILGYHNPTLDNSGGRNTTSVTTTSFASSNNGTAGATPFQMDLSSAPSSTGSDNNAAFFSGGGIFVQQQSGHGGNGHGNGSSGSLSCSIPFATPIFSLNSNTSYESSAGYGNWIGPTLHTFQSHAKPSLFQTPIFGME* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1498 526 CDD AP2 148 217 IPR001471 GO:0003700|GO:0006355
Pvu3g1498 526 MobiDBLite consensus disorder prediction 324 374 - -
Pvu3g1498 526 PRINTS Ethylene responsive element binding protein signature 150 161 IPR001471 GO:0003700|GO:0006355
Pvu3g1498 526 PRINTS Ethylene responsive element binding protein signature 291 311 IPR001471 GO:0003700|GO:0006355
Pvu3g1498 526 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 131 435 - -
Pvu3g1498 526 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 131 435 - -
Pvu3g1498 526 SUPERFAMILY DNA-binding domain 250 311 IPR016177 GO:0003677
Pvu3g1498 526 MobiDBLite consensus disorder prediction 354 374 - -
Pvu3g1498 526 Gene3D AP2/ERF domain 149 217 IPR036955 GO:0003700|GO:0006355
Pvu3g1498 526 Gene3D AP2/ERF domain 251 311 IPR036955 GO:0003700|GO:0006355
Pvu3g1498 526 ProSiteProfiles AP2/ERF domain profile. 149 215 IPR001471 GO:0003700|GO:0006355
Pvu3g1498 526 ProSiteProfiles AP2/ERF domain profile. 251 309 IPR001471 GO:0003700|GO:0006355
Pvu3g1498 526 MobiDBLite consensus disorder prediction 1 31 - -
Pvu3g1498 526 SUPERFAMILY DNA-binding domain 148 217 IPR016177 GO:0003677
Pvu3g1498 526 SMART rav1_2 149 221 IPR001471 GO:0003700|GO:0006355
Pvu3g1498 526 SMART rav1_2 251 315 IPR001471 GO:0003700|GO:0006355
Pvu3g1498 526 CDD AP2 250 311 IPR001471 GO:0003700|GO:0006355
Pvu3g1498 526 Pfam AP2 domain 251 301 IPR001471 GO:0003700|GO:0006355
Pvu3g1498 526 Pfam AP2 domain 149 207 IPR001471 GO:0003700|GO:0006355
Pvu3g1498 526 MobiDBLite consensus disorder prediction 338 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1498 Pvu-Chr3 34150168 34153951 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1498 94 396 AP2-EREBP Transcription Factor Family AT5G57390 68.615 1.91e-141 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Pvu3g1498 AP2 2.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1498 K09285 - gmx:100797828 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1498 3 34150168 34153951 Pvu3g1498 3 34150168 34153951 ECH