Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1467 ATGCGGGATAGTGTGAAGAAGTCAAACGACAAAGGATCTAAAAAATCTGATCATTTGAAGGCACGTACGAAAGGGAAGAAGGATAAAGTGAAAGTGGAATCAAAATCTCATACAAAAAATGTTGGCACTGATGTATCAAGGAAAAGAGTTATCTCTTCCCTCAAGATCAAAGGGCCACGTAAGGATTCTTCAGATAAGAAATTGATTACTGGACAAAAATTGCCTTTGAAGAACAAAAAATCTTCACAGAAGCCATCCTTGAAGTTACAAGGCAAAAAAGCTTCTCTTAGCTCTAGAAAAGAGGGGAAAGATGCTGATGGGGAGGTAAAGCTTAAAAAAATGAAGAGAAAGAGAAAGAAGAAAAGACAAAGGAATAATTTGGATCTTGATGATCCTTCACGCCTGCAGAGGAGAACACGGTATCTTTTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAAAGAGCAAGGAAGCAAATTTTAAAATGTAGACTTGGTATTCGTGATGCCATTCGCCAGTTGGATTCTCTTGGTTCATTGAGTAGCATTGAAGATTCTGCAATTGCTCCAGATGGATCTGGTTGTCATGAACATATATTCTGTGCTAAGTGCAAAGTGCGAGAAGAACCTCCAGATAATGATGTTATACGATGCTATGGTACATGCAAGCGTGCTTTTCACCAAAGATGTGTGGACCCTCCTTTAGACACTGAAAATGTTCCTCCTGGAAGGCAGAACTGGTTTTGTAAATTTTGTGAATGTAAGATGGAAATACTGGAAGCTATGAATGCTCATCTTGGAACTCACTTCTCCTTGCACAGTGCTTGGCAGGATGTATTCAAAGAAGAGGCTGCTATACCTGATGGTGAGACTGCATTACTGAATCCTGAAGAAGAATGGCCGTCAGATGATTCTGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAGTCCCAATATCAACATGGAAGGAACTAATGATAGTGCATCTGATGATTTAAGCAGTTCTACCAGTCTGTGTTATTCCGATGATGAATATTCTCCAGTAGATGGTGTCAGTCATGAATATCTTTTTGTCAATAGCAGCATAGATTCAGATGAGTCTGAGGACAAAGCCTGTGGGCGTAGGCAGCGAAAAGCTGTTGACTACAAGCAGCTTTATGATGAAATGTTTGGGAAGGAAGCTCCTGCATATGAACAATTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGGGAAAAGGAGTGTGATGCTGTTGATTCTCTTATGACTTTGCATGAAAGTGAGAATAAGCACCCCAATAATGAGCAAAACAACATGACAATAAAATATTCTTCTAGCACAAATATGAAGAGGCATTGTTTTAGGATTCCGCGTGATTCAGTTGAGAAGCTTCGCCAAGTTTTTGCTGTGAATGAACTTCCTCCAAGATCTATTAGAGAGGATCTTTCAAAAGAACTGGGACTTGATACTGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTGGCGCTTAAAAACAGAAAGCATCAAGCAGAAGGAGAAGCAAATCAACTTAAGAGAATCACTTCCACAAAGAACTCCAGATTACAAAATCAGGAGAATACTGATCTTTTGAAATCAAAGACCTTGAAAATTACAAGTCATTCCGAGAAGGATGTTAAAAATGTCAGTGGCAGAAAGAAAATTAAGTTTTCTAGCAAGAAAAGACCACCAGAAATTCCTCCACCTCCAGGAGAAAATGGCAACAAGGACTTAATGGAGATCAGTGATGATGTGAGCTTGAAGAAACTATTGAAGAAAAAAAAGAAGAGGTTGGTAAGTTTTACATTTGAAGGAGATTCTCAGACGGCAGAGTTGGAATTTGAAAGACTATGCAAATTGAAGCAAAAACTAGTTAGTATGAAGCAAAAATTAACAACAATTCAAAGTTTCAGAGTAAAGGGTTCAGATGAACCCCATTCTAATGAACCATCCATTGTATATGTACCCACAGCTGTTTTAAGGGAAAAATTTGAATGA 2103 0.389 MRDSVKKSNDKGSKKSDHLKARTKGKKDKVKVESKSHTKNVGTDVSRKRVISSLKIKGPRKDSSDKKLITGQKLPLKNKKSSQKPSLKLQGKKASLSSRKEGKDADGEVKLKKMKRKRKKKRQRNNLDLDDPSRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCRLGIRDAIRQLDSLGSLSSIEDSAIAPDGSGCHEHIFCAKCKVREEPPDNDVIRCYGTCKRAFHQRCVDPPLDTENVPPGRQNWFCKFCECKMEILEAMNAHLGTHFSLHSAWQDVFKEEAAIPDGETALLNPEEEWPSDDSEDDDYDPERKEDSPNINMEGTNDSASDDLSSSTSLCYSDDEYSPVDGVSHEYLFVNSSIDSDESEDKACGRRQRKAVDYKQLYDEMFGKEAPAYEQLSEDEDWGPGKRKRREKECDAVDSLMTLHESENKHPNNEQNNMTIKYSSSTNMKRHCFRIPRDSVEKLRQVFAVNELPPRSIREDLSKELGLDTEKVSKWFKNARYLALKNRKHQAEGEANQLKRITSTKNSRLQNQENTDLLKSKTLKITSHSEKDVKNVSGRKKIKFSSKKRPPEIPPPPGENGNKDLMEISDDVSLKKLLKKKKKRLVSFTFEGDSQTAELEFERLCKLKQKLVSMKQKLTTIQSFRVKGSDEPHSNEPSIVYVPTAVLREKFE* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1467 700 ProSitePatterns Zinc finger PHD-type signature. 223 274 IPR019786 -
Pvu3g1467 700 SMART PHD_3 222 275 IPR001965 -
Pvu3g1467 700 ProSiteProfiles Zinc finger PHD-type profile. 220 277 IPR019787 -
Pvu3g1467 700 MobiDBLite consensus disorder prediction 94 111 - -
Pvu3g1467 700 MobiDBLite consensus disorder prediction 75 93 - -
Pvu3g1467 700 Gene3D - 476 547 - -
Pvu3g1467 700 MobiDBLite consensus disorder prediction 535 559 - -
Pvu3g1467 700 CDD homeodomain 477 538 IPR001356 GO:0003677
Pvu3g1467 700 Coils Coil 529 549 - -
Pvu3g1467 700 ProSiteProfiles 'Homeobox' domain profile. 474 534 IPR001356 GO:0003677
Pvu3g1467 700 CDD PHD_PRHA_like 222 274 IPR045876 -
Pvu3g1467 700 Pfam PHD-finger 222 277 IPR019787 -
Pvu3g1467 700 MobiDBLite consensus disorder prediction 344 363 - -
Pvu3g1467 700 MobiDBLite consensus disorder prediction 319 335 - -
Pvu3g1467 700 MobiDBLite consensus disorder prediction 314 363 - -
Pvu3g1467 700 MobiDBLite consensus disorder prediction 1 17 - -
Pvu3g1467 700 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 10 669 - -
Pvu3g1467 700 SMART HOX_1 476 538 IPR001356 GO:0003677
Pvu3g1467 700 SUPERFAMILY Homeodomain-like 471 533 IPR009057 -
Pvu3g1467 700 MobiDBLite consensus disorder prediction 544 559 - -
Pvu3g1467 700 MobiDBLite consensus disorder prediction 26 44 - -
Pvu3g1467 700 Pfam Homeodomain 485 529 IPR001356 GO:0003677
Pvu3g1467 700 SUPERFAMILY FYVE/PHD zinc finger 214 280 IPR011011 -
Pvu3g1467 700 MobiDBLite consensus disorder prediction 1 132 - -
Pvu3g1467 700 PANTHER POLYCOMB PROTEIN PCL 10 669 - -
Pvu3g1467 700 MobiDBLite consensus disorder prediction 576 613 - -
Pvu3g1467 700 MobiDBLite consensus disorder prediction 452 471 - -
Pvu3g1467 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 286 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1467 Pvu-Chr3 33522655 33528111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1467 125 539 Homeobox Transcription Factor Family AT4G29940 55.504 3.88e-147 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Pvu3g1467 Homeodomain 9.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1467 - - gmx:100817639 1082.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1467 3 33522655 33528111 Pvu3g1467 3 33522655 33528111 ECH
Pvu3g1467 3 33522655 33528111 Pvu9g2442 9 34803202 34809364 PCT