Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1460 ATGGACAATATTGTTGAGGACTACGACCATTTCCTTGACTCCTTCTTCCAAAACGAAGAGCTTGATAGCTGGGCAATGGATGAGGCGGCGTTGTCCGGGTACTATGATTCAAGCTCTCCGGACGGTGGTGCTTCATCGGTGGCGTCAAAGAACATTGTTTCGGAGAGGAATAGGAGGAAGAAGCTGAACGAAAGGCTCTTTGCGCTTAGAGCAGTGGTCCCCAATATCAGTAAGATGGATAAGGCTTCTATCATTAAGGATGCTATTGAATACATCCAGAACTTGCATGAGCAAGAGAAAAGAATCAAAGCAGAGATTTTGAATCTCGAATCTGGGAAGCTCAAAAACCCAACCTATGAATTTGATCACGACCTCCCTGTTCTCCTCAGGTCTAAGAAGAATAGAACAGAACAGCTATTTGATTCCGGCACTTCAAGAAATTCCCCTATTGAATTAATTGAGCTGAGGGTTACGTACATGAGAGAGAAGACGTTTGTGGTGAGCTTGACATGTAGTAAAAGGACAGACACGATGGTAAAACTGTGTGAGGTGTTCGAATCTTTAAAGCTGAAGGTCATTACAGCCAATATCACTTCTTTTTCAGGAACACTTTTGAAGACAGTCTTCATCGAG 633 0.4329 MDNIVEDYDHFLDSFFQNEELDSWAMDEAALSGYYDSSSPDGGASSVASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQNLHEQEKRIKAEILNLESGKLKNPTYEFDHDLPVLLRSKKNRTEQLFDSGTSRNSPIELIELRVTYMREKTFVVSLTCSKRTDTMVKLCEVFESLKLKVITANITSFSGTLLKTVFIE 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1460 211 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 12 210 - -
Pvu3g1460 211 Pfam Helix-loop-helix DNA-binding domain 53 95 IPR011598 GO:0046983
Pvu3g1460 211 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 109 IPR036638 GO:0046983
Pvu3g1460 211 Gene3D - 45 111 IPR036638 GO:0046983
Pvu3g1460 211 PANTHER TRANSCRIPTION FACTOR BHLH35 12 210 - -
Pvu3g1460 211 SMART finulus 52 101 IPR011598 GO:0046983
Pvu3g1460 211 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1460 Pvu-Chr3 33447005 33448263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1460 14 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 64.356 5.09e-82 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g1460 HLH 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1460 - - gmx:100803916 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1460 3 33447005 33448263 Pvu3g1460 3 33447005 33448263 ECH
Pvu3g1460 3 33447005 33448263 Pvu9g2437 9 34746948 34754176 PCT