Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1454 ATGAGTTTCTCCAAGGGTTCTCCTGGCAGCCAGACGCCGGGTGATATTGAGGCTGGGTCTCCCACTGGCTGGTCTGATGATTTTGATGGAGACTTTTCTGCTGATCCATTTGATCTTACGAGAACAAAGAATGCTCCGGTTCAACGCCTCAGGCGCTGGAGGCAAGCGGCGCTTGTCCTCAATGCTTCTCGTCGATTTCGTTACACCTTGGACTTAAAGAAAGAAGAAGAGAAGGAGAGAGTACTAAGAATTATTATAGTGCATACACGGGCCATTCAGGCTGCATATCGGTTCAAGGAAGCTGGGCAAATGAATGGACTACGAACTATAAAACCTCATTCAAGCTCCACTGGAGAATTTTCACCTCATTCAAGCTCCACTGGAGAATTTTCAATTGGACAAGAACAACTTTCTTCAATTTCAAGGAATCGTGATACTACTGCTCTGTGGGAAAATGAAGGGGTTGTAGGGTTATCAAATTTATTGAAAACCAATTTAGAGAAGGGCATTCGAGGTGATGACGACGACTTGGTAATACGGAGGAATGCATTTGGCTCCAACAACTACCCTCGAAAGACCGGAAGAAGATTTTTGATGTTTATGTGGGATGCTTGCAAGGATCTGACCTTGATTATTCTAATGGTAGCCGCAATGGCTTCATTAGCACTGGGGATAAAATCTGAGGGTATCCAGGAAGGTTGGTATGACGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTCTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCAAGATCTAAATGAGCACAAGAGAAACATACGTTTGGAGGTCACTCGAGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTTGGTGATGTTATACCCCTTAACATTGGTAACCAGGTCCCCGCTGATGGAGTTTTGATTACTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACCGGGGAGAGCAAAATTGTCGAAAAAAATTCTAATGATCCTTTTCTGATTTCTGGTTGTAAAGTTGCAGATGGCAATGGAACTATGCTGGTAACGGCTGTTGGTATTAATACGGAATGGGGGCTTCTAATGTCTAGCATTTCAGAAGACAATGGTGAAGAAACTCCTTTGCAGGTACGCTTAAATGGTCTCGCCACCTTAATTGGTATTGTTGGACTCTCTGTGGCTGTTATTGTTCTGATAGTGCTGCTGGCCAGGTATTTCTCTGGGCATACTAGAAACCCAGATGGAAGTGTTCAATTTATAGCGGGCAAAACCAAAGTTGGTGATGCTTTTGATGGAGTAATCAAGATATTCACCATTGCGGTCACCATTGTAGTGGTTGCAGTGCCTGAAGGGTTGCCTTTAGCAGTTACCTTAACACTTGCCTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTCTCCGCCTGTGAGACAATGGGCTCAGCCACAACCATTTGTAGTGATAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTGCATTGGTGGGAAGAAGATCATTCCTCCTGATGATTCACAACAATTCTCTGCTATGCTACGCTCTTTGCTGATTGAAGGTGTTGCACAGAACACTAATGGAAGTGTTTATGTCCCTGAGGGTGGTAATGATGTTGAGATTTCTGGATCACCAACCGAAAAGGCAATTTTAGACTGGGGAATTAAGCTTGGGATGCGTTTTGATGCTGCCAGATCAGAATCATCAATTATCCATGTCTTCCCCTTTAATTCAGAGAAAAAGCGAGGAGGAGTTGCAATACAGATGCCTGACTCTGAAATCCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTTGCTTGCTGTACAGGGTATATTGATGTTAATGATCAGTTGGTAGAGATGGATGAAGAGAAGATGTCACAATTTAAAAAAGCTATTGAAGATATGGCTGCTGATAGTCTACGCTGTGTTGCAATTGCATATAGATCATATGAAATGGAGAATGTTCCAACTAGTGAAGAACTTGCTCACTGGTCATTACCAGACAATGATCTTTTTTTATTGGCTATTATTGGCCTGAAGGATCCTTGTCGACCTGGGGTCAAAGATGCAGTGCAGCTTTGCCAAAAGGCTGGGGTTCAGGTAAAAATGGTCACCGGTGACAATGTTAAAACCGCAAAAGCAATTGCTGTGGAATGTGGAATTCTTGGTTCAATCTCTGAAGCTACAGAGCCAATCATCATTGAAGGAAAAAGATTTCGTGCCTTGACAGATGAAGGGAGAGTAGAAATTGTTGACAGCATATTGGTTATGGGACGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGCCATGTTGTGGCTGTAACTGGAGATGGAACAAATGATGCTCCCGCACTACATGAGGCCGATATTGGTCTTGCAATGGGTATACAAGGAACAGAAGTTGCTAAAGAGAGCTCTGATATTATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAAATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCACTTGCTATAAACGTTGTTGCTGCATTTTCAACAGGTGACATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCATTAGCCTTGGCAACTGAACCACCAACTGATTCCCTGATGGATCAGCGTCCAATGGGCCGAAGAGAACCTCTTGTATCAAATATTATGTGGAGGAATCTGCTGATACAGGCAATGTATCAAGTTTCTGTGTTGCTTATACTTAATTTCCAAGGTGTGAAGTTACTGGGTTTGAGGAATGAACCCAACCGCCCTGCAATCAAAGTGAAGAACTCTCTGATATTCAATGCATTTGTTTTTTGTCAAGTCTTTAATGAATTTAATGCCCGAAAGCCAGCTAAATTCAACATATTCAAGGGAGTCACAAGAAACTACCTCTTTATGGGGATAGTGGGAACAACTGTTGTGCTCCAGATTGTCATCATTGAATTTCTTGGAAAGTTCACTAAAACAGTCAAGCTTAATTGGAAGCTGTGGCTCATTTCTATTATTATAGCATTTATCAGCTGGCCTCTTGCTGTGGTTGGAAAACTGATACCAGTACCGAAGGTTGAACTCAGTAACTTTTTCCGAAGATATATTCGAAGATCTTAA 3249 0.4204 MSFSKGSPGSQTPGDIEAGSPTGWSDDFDGDFSADPFDLTRTKNAPVQRLRRWRQAALVLNASRRFRYTLDLKKEEEKERVLRIIIVHTRAIQAAYRFKEAGQMNGLRTIKPHSSSTGEFSPHSSSTGEFSIGQEQLSSISRNRDTTALWENEGVVGLSNLLKTNLEKGIRGDDDDLVIRRNAFGSNNYPRKTGRRFLMFMWDACKDLTLIILMVAAMASLALGIKSEGIQEGWYDGGSIAFAVILVILVTAISDYKQSLQFQDLNEHKRNIRLEVTRDGRRVEISIYDVVVGDVIPLNIGNQVPADGVLITGHSLAIDESSMTGESKIVEKNSNDPFLISGCKVADGNGTMLVTAVGINTEWGLLMSSISEDNGEETPLQVRLNGLATLIGIVGLSVAVIVLIVLLARYFSGHTRNPDGSVQFIAGKTKVGDAFDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACIGGKKIIPPDDSQQFSAMLRSLLIEGVAQNTNGSVYVPEGGNDVEISGSPTEKAILDWGIKLGMRFDAARSESSIIHVFPFNSEKKRGGVAIQMPDSEIHIHWKGAAEIVLACCTGYIDVNDQLVEMDEEKMSQFKKAIEDMAADSLRCVAIAYRSYEMENVPTSEELAHWSLPDNDLFLLAIIGLKDPCRPGVKDAVQLCQKAGVQVKMVTGDNVKTAKAIAVECGILGSISEATEPIIIEGKRFRALTDEGRVEIVDSILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALAINVVAAFSTGDIPLNTVQLLWVNLIMDTLGALALATEPPTDSLMDQRPMGRREPLVSNIMWRNLLIQAMYQVSVLLILNFQGVKLLGLRNEPNRPAIKVKNSLIFNAFVFCQVFNEFNARKPAKFNIFKGVTRNYLFMGIVGTTVVLQIVIIEFLGKFTKTVKLNWKLWLISIIIAFISWPLAVVGKLIPVPKVELSNFFRRYIRRS* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1454 1082 SUPERFAMILY HAD-like 493 907 IPR036412 -
Pvu3g1454 1082 PRINTS P-type cation-transporting ATPase superfamily signature 319 333 - -
Pvu3g1454 1082 PRINTS P-type cation-transporting ATPase superfamily signature 495 509 - -
Pvu3g1454 1082 PRINTS P-type cation-transporting ATPase superfamily signature 695 706 - -
Pvu3g1454 1082 PRINTS P-type cation-transporting ATPase superfamily signature 717 727 - -
Pvu3g1454 1082 PRINTS P-type cation-transporting ATPase superfamily signature 802 821 - -
Pvu3g1454 1082 PRINTS P-type cation-transporting ATPase superfamily signature 826 838 - -
Pvu3g1454 1082 SUPERFAMILY Calcium ATPase, transduction domain A 274 368 IPR008250 -
Pvu3g1454 1082 Pfam Cation transporter/ATPase, N-terminus 150 219 IPR004014 -
Pvu3g1454 1082 PRINTS H+-transporting ATPase (proton pump) signature 648 666 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Pvu3g1454 1082 PRINTS H+-transporting ATPase (proton pump) signature 802 818 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Pvu3g1454 1082 PRINTS H+-transporting ATPase (proton pump) signature 834 859 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Pvu3g1454 1082 Gene3D - 179 371 - -
Pvu3g1454 1082 MobiDBLite consensus disorder prediction 111 132 - -
Pvu3g1454 1082 MobiDBLite consensus disorder prediction 1 18 - -
Pvu3g1454 1082 SMART Cation_ATPase_N_a_2 149 225 IPR004014 -
Pvu3g1454 1082 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 435 520 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Pvu3g1454 1082 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 769 882 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Pvu3g1454 1082 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 240 410 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Pvu3g1454 1082 Pfam haloacid dehalogenase-like hydrolase 492 816 - -
Pvu3g1454 1082 MobiDBLite consensus disorder prediction 1 27 - -
Pvu3g1454 1082 Gene3D - 203 1056 - -
Pvu3g1454 1082 Pfam E1-E2 ATPase 274 473 - -
Pvu3g1454 1082 Pfam Ca2+-ATPase N terminal autoinhibitory domain 34 77 IPR024750 GO:0005516
Pvu3g1454 1082 SUPERFAMILY Calcium ATPase, transmembrane domain M 151 1066 IPR023298 -
Pvu3g1454 1082 Gene3D - 505 702 IPR023299 GO:0000166
Pvu3g1454 1082 Gene3D - 46 101 - -
Pvu3g1454 1082 Gene3D - 492 847 IPR023214 -
Pvu3g1454 1082 PANTHER CATION TRANSPORTING ATPASE 31 1078 - -
Pvu3g1454 1082 CDD P-type_ATPase_Ca_PMCA-like 180 935 - -
Pvu3g1454 1082 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 130 1066 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Pvu3g1454 1082 SFLD Haloacid Dehalogenase 477 854 - -
Pvu3g1454 1082 PANTHER CALCIUM-TRANSPORTING ATPASE 31 1078 - -
Pvu3g1454 1082 ProSitePatterns E1-E2 ATPases phosphorylation site. 497 503 IPR018303 -
Pvu3g1454 1082 Pfam Cation transporting ATPase, C-terminus 887 1064 IPR006068 -
Pvu3g1454 1082 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 502 699 IPR023299 GO:0000166
Pvu3g1454 1082 SFLD p-type atpase 477 854 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1454 Pvu-Chr3 33294648 33317621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1454 15 1082 Primary Pumps ATPases AT4G29900 69.711 0.0 1511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1454 K01537 - gmx:100790157 1838.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1454 3 33294648 33317621 Pvu3g1454 3 33294648 33317621 ECH
Pvu3g1454 3 33294648 33317621 Pvu9g2425 9 34574177 34595867 PCT