Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1450 ATGGATAGGTTTAAGCAGGTGGAGAAGAAGAAAAACACAGGGCGGAAGAAGATCGTGATAGAGAAGATTGAGAAATCGAGCAACAAGCAAGTGACATTCTCAAAAAGAAGAGTAGGGCTGTTCAAGAAAGCGAGTGAACTGTGCATTTTGTGCAATGTTAATGTAGCCATAATTGTGTTTTCTCCTGCTGAAAAGTTGTTCTGCTTTGGGCACCCAGATGTGGAAGCCATTGTTGGTAACTACCTGAAGGGAGCGAAGGTGTTGGTACCATCAGCGTCAAGAGGGTCATATGAAGAAAGCAACATGCAGTACGAGGAGGCAATGAGGAATTTGGCGTTGGAAAAGAAGAATCTGACAGAGACTGAAGCATTGGTTAAGGGTATGACCAGAAGGTGGTGGGAGGACCCCATTGATCAGATGAGTGAACGTGAGTTGGAACAGTTTATGGTCTCACTTTATGAGTTGAGGAAGAAATTAACCGAAAGGGCTGGTAAATTGTTCATGCTTTCAATTCAATGA 519 0.4335 MDRFKQVEKKKNTGRKKIVIEKIEKSSNKQVTFSKRRVGLFKKASELCILCNVNVAIIVFSPAEKLFCFGHPDVEAIVGNYLKGAKVLVPSASRGSYEESNMQYEEAMRNLALEKKNLTETEALVKGMTRRWWEDPIDQMSERELEQFMVSLYELRKKLTERAGKLFMLSIQ* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1450 172 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 69 IPR002100 GO:0003677|GO:0046983
Pvu3g1450 172 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 10 168 - -
Pvu3g1450 172 Gene3D - 26 93 IPR036879 GO:0003677|GO:0046983
Pvu3g1450 172 Coils Coil 97 124 - -
Pvu3g1450 172 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Pvu3g1450 172 PANTHER MADS BOX PROTEIN 10 168 - -
Pvu3g1450 172 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Pvu3g1450 172 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Pvu3g1450 172 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Pvu3g1450 172 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Pvu3g1450 172 SUPERFAMILY SRF-like 14 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1450 Pvu-Chr3 33274471 33274989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1450 10 171 Type I MADS-box Gene Family AT5G60440 38.333 2.93e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu3g1450 SRF-TF 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1450 - - vra:106766532 245.358