Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1446 ATGCCACTAGATCTTGAAGCCCTTCCCAAGATTAGGATGGAAGAACAAACAGCCATTGAAGAAGCAGCTTCCGCTGGGTTGAAAAGTATGGAGCATCTCATTCGTGTCCTTTCCTCTCAAATCCCTTCTTCTTCTTCCGCCGCCTCCTCTTCTTCCACACACCACCGCCGTCTTAATCTCAACCACCTTGACTGCACGGAAATCACCGACTTCACTGTCTCCAAGTTCAAACAAGTCATCAACTTGTTGAATCGCACCGGTCACGCTCGCTTTCGTCGCGCACCTTCCCATCCCTCTCCCTCCCCCTCTCTTCCTTCTCCACCGCAACCTCACACTCAAAAACCCGCTCTTCATTTTGCAAACCCTAAGGTCAAGTCTATTCCCAATCCCAACCCTTCTTCCACGGATTTCTCGGTCTCTCAATACTCCAAGACCAAAGACACCACCTTTACCATATCCCCTCCCATCTCCACCACCACCTCCTCCTTCATGTCCTCCATCACGGCCGACGGAAGCGTCTCCGACGGCAAGATCGGCCCCGCCATCCTCTCCTCCGGGAAGCCTCCTCTCTCCTCATCCCACCGCAAAAGGTGTCACGACGCCACCCTCTCCGCCGGGAAAGCCTCATCCTCCGCCAACTGTCATTGCTCCAAGAGAAGGAAATCCCGTCTGAAACGAATGATTCGAGTGCCGGCGGTGAGTTCGAAGATCGCCGATATCCCTGTGGACGAGTACTCCTGGAGAAAGTATGGTCAAAAACCCATCAAGGGATCACCCTACCCACGAGGGTACTACAAGTGCAGTAGCGTGCGAGGGTGTCCGGCGAGGAAGCACGTGGAGCGGGCCCAGGATGACCCCAACATGCTCATCGTTACCTACGAGGGAGAGCACCGTCATCCGCAGCCGCGTCTGCCGGAAACCGCCGCCACCGCTGCAGTTGCTTTCGGTGCTCAGGCTGTTTAA 963 0.5524 MPLDLEALPKIRMEEQTAIEEAASAGLKSMEHLIRVLSSQIPSSSSAASSSSTHHRRLNLNHLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSHPSPSPSLPSPPQPHTQKPALHFANPKVKSIPNPNPSSTDFSVSQYSKTKDTTFTISPPISTTTSSFMSSITADGSVSDGKIGPAILSSGKPPLSSSHRKRCHDATLSAGKASSSANCHCSKRRKSRLKRMIRVPAVSSKIADIPVDEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERAQDDPNMLIVTYEGEHRHPQPRLPETAATAAVAFGAQAV* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1446 320 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 9 307 - -
Pvu3g1446 320 MobiDBLite consensus disorder prediction 121 140 - -
Pvu3g1446 320 Pfam Plant zinc cluster domain 195 239 IPR018872 -
Pvu3g1446 320 MobiDBLite consensus disorder prediction 91 116 - -
Pvu3g1446 320 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 9 307 IPR044810 GO:0003700
Pvu3g1446 320 SMART WRKY_cls 241 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu3g1446 320 MobiDBLite consensus disorder prediction 178 211 - -
Pvu3g1446 320 SUPERFAMILY WRKY DNA-binding domain 240 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu3g1446 320 Pfam WRKY DNA -binding domain 243 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu3g1446 320 ProSiteProfiles WRKY domain profile. 236 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu3g1446 320 MobiDBLite consensus disorder prediction 126 140 - -
Pvu3g1446 320 MobiDBLite consensus disorder prediction 98 112 - -
Pvu3g1446 320 Gene3D WRKY domain 228 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1446 Pvu-Chr3 33212871 33214510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1446 1 317 WRKY Transcription Factor Family AT2G24570 50.427 1.40e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pvu3g1446 WRKY 2.3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1446 - - var:108322692 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1446 3 33212871 33214510 Pvu3g1446 3 33212871 33214510 ECH
Pvu2g0163 2 1777772 1779281 Pvu3g1446 3 33212871 33214510 PCT
Pvu3g1446 3 33212871 33214510 Pvu9g2418 9 34493623 34495359 PCT