Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1432 ATGGAAGACGCTGAAGAATGCATCACTGGGCTATGTTTGGGACTAGGAATGGGAGGGCATGTCCCAATAAAGGGTAAGCAGAAAGAGAAGAGGCCTGTGGCGTGCCTAGACTTAGCGTTTGAGCTTTGTCCAAAAGGGGAAGCCATTAACTTGAATCACGATAAGGTAGAGAGTACTGATTCTGATAACGATAACAGCAACAACAACAACCGAAGCAGAAAGAAACTGAGGCTTTCCAAGGACCAATCATCCATGCTTGAGAACAGCTTCAAACTGCACACCACTCTTAATCCGGTTCAGAAACAAGCACTGGCTCATCAATTGAAGTTAAAGACAAGACAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAACTGAAGCAGACAGAAGTGGAGCGTGAGTGGTTGAAAAAACAGTGTCAAAATCTAAGCGATGAGAACAAAAGATTGAAGAAGGAATTGCAGGAAGTACGTGCACTTAAGGTTGGATGCATTCAACTATCCAAAACGGCGACTCTGACTATGTGTTCTTCCTGCGAGAAACTAGTAAAACTGAATGAAGAAAAGAAGAATAATATAGAGTCAGAGGGTAGAAATTGA 606 0.4257 MEDAEECITGLCLGLGMGGHVPIKGKQKEKRPVACLDLAFELCPKGEAINLNHDKVESTDSDNDNSNNNNRSRKKLRLSKDQSSMLENSFKLHTTLNPVQKQALAHQLKLKTRQVEVWFQNRRARTKLKQTEVEREWLKKQCQNLSDENKRLKKELQEVRALKVGCIQLSKTATLTMCSSCEKLVKLNEEKKNNIESEGRN* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1432 201 PANTHER - 53 189 - -
Pvu3g1432 201 CDD homeodomain 74 130 IPR001356 GO:0003677
Pvu3g1432 201 Pfam Homeodomain 73 127 IPR001356 GO:0003677
Pvu3g1432 201 MobiDBLite consensus disorder prediction 55 80 - -
Pvu3g1432 201 SMART HOX_1 71 133 IPR001356 GO:0003677
Pvu3g1432 201 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 53 189 - -
Pvu3g1432 201 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Pvu3g1432 201 Coils Coil 121 162 - -
Pvu3g1432 201 Gene3D - 77 127 - -
Pvu3g1432 201 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Pvu3g1432 201 SMART halz 129 172 IPR003106 GO:0006355|GO:0043565
Pvu3g1432 201 SUPERFAMILY Homeodomain-like 58 130 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1432 Pvu-Chr3 33069106 33070578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1432 58 184 Homeobox Transcription Factor Family AT4G16780 62.308 3.80e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pvu3g1432 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1432 K09338 - gmx:100812222 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1432 3 33069106 33070578 Pvu9g2413 9 34422406 34423755 PCT