Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1421 ATGATTCCAGCCTATCGCCACTCAGTATCTTCTGTTATTCCTCTGGATCTTAATGAAGATCAAAACCATGAGCTCTTCACTCCCACTCATCATGCTTACCCTTCTTTTTCTTCTCTATCTTCATCATATCCACTTCTCTTCAACCCTCCAGAACAAGAAGCTGGATCACACTACTGGGAACCAACAAAGCACTTACCAGCTTATGAACAGGCTGAGAAGATTAACCCTACCAGGGGATCATGGGATCACTCGGTGACAGAAAGCGAGCTCAAGGTGGCAGTTTGGAAGAATAAAGAGAGGAGTGAAGATCATGAGGCAGCTGCTGAGGATGGTTCGGTGAACTTGATGTCTTTAAAGATGAGAATGATGCGGAAGACGATGGTGCCGGATCAAACTGGTGCATATATAGAAGACAGAACTATGCACAAGTTTGAAGATCAGAAGCAACCATTGTCACCTCTTGGAACTGATAACAGCAGCAGCAGCAACAACTATTCAAACCACAGTAATAATACTGTTAGGGTTTGTGCTGATTGCCACACCACTAAGACTCCTCTCTGGAGGAGTGGACCAAGAGGCCCCAAGTCACTATGCAACGCCTGTGGAATTCGACAAAGGAAGGCGAGACGAGCCATGGCAGCTGCGGCATCGGGAAATGGAACAGTGATTTTGGAAACTCAGAAATCTGTGAAGGGAAACAAGTTGCAGAAGAAAGAGAAGAAGACAAGAACTCAGGGTGCACCACAGATGAAAAAGAAGCGCAATCATGGGGTTGGAGCAAAGCCATCTCAAAGCAGAAACAAGTTTGGTTTTGAGGATTTGACATTGCGCCTAAGAAAGAGCTTGGCTATGCATCAAGTCTTCCCTCAGGACGAGAAGGAGGCTGCAATCCTTCTCATGGCTTTATCATATGGCCTTGTTCATGGATGA 930 0.457 MIPAYRHSVSSVIPLDLNEDQNHELFTPTHHAYPSFSSLSSSYPLLFNPPEQEAGSHYWEPTKHLPAYEQAEKINPTRGSWDHSVTESELKVAVWKNKERSEDHEAAAEDGSVNLMSLKMRMMRKTMVPDQTGAYIEDRTMHKFEDQKQPLSPLGTDNSSSSNNYSNHSNNTVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAASGNGTVILETQKSVKGNKLQKKEKKTRTQGAPQMKKKRNHGVGAKPSQSRNKFGFEDLTLRLRKSLAMHQVFPQDEKEAAILLMALSYGLVHG* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1421 309 Gene3D - 171 266 IPR013088 GO:0006355|GO:0008270
Pvu3g1421 309 MobiDBLite consensus disorder prediction 148 169 - -
Pvu3g1421 309 MobiDBLite consensus disorder prediction 236 266 - -
Pvu3g1421 309 MobiDBLite consensus disorder prediction 151 169 - -
Pvu3g1421 309 CDD ZnF_GATA 175 203 IPR000679 GO:0006355|GO:0043565
Pvu3g1421 309 Pfam GATA zinc finger 176 209 IPR000679 GO:0006355|GO:0043565
Pvu3g1421 309 SMART GATA_3 170 221 IPR000679 GO:0006355|GO:0043565
Pvu3g1421 309 ProSiteProfiles GATA-type zinc finger domain profile. 170 206 IPR000679 GO:0006355|GO:0043565
Pvu3g1421 309 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 309 - -
Pvu3g1421 309 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 210 - -
Pvu3g1421 309 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 309 - -
Pvu3g1421 309 ProSitePatterns GATA-type zinc finger domain. 176 201 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1421 Pvu-Chr3 32935145 32936991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1421 87 309 C2C2-Gata Transcription Factor Family AT4G26150 39.526 7.46e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu3g1421 GATA 3.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1421 - - gmx:100810698 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1421 3 32935145 32936991 Pvu3g1421 3 32935145 32936991 ECH
Pvu3g1421 3 32935145 32936991 Pvu9g2405 9 34352327 34354236 PCT