Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1417 ATGGCTCCTAGAATCCTTCTATGCGGCGACGTTTTAGGTCGCCTCAACCAACTCTTTAAGCGCGTCTCTTCGGTGACCAAATCTGCAGGTCCATTCGACGCGCTCTTATGCGTGGGCCAGTTCTTCCCGGACTCACCGGACCAATTGGAAGAGTTCACGGCGTACATTGAAGGTGGATCACAGATTCCGCTTCCGACTTACTTCGTCGGCGATTACGGCGTCGCCGCCCCTAAATTTCTCTTGCAAGCTTCCAAGGACTCCGCCAACCGCGGTTTCATGATGGACGGCTTCAAGGTTTGCCGCAACTTGTATTGGTTGAAAGGCGGTGGCAAATTCCCCCTCTTCGGGTTATCCGTGGCCTATTTATCTGGTAGGAAGTCATCCAGTGTTCAACAGTTTGGAACTTACACTGAAGATGATGTTGATGCTTTGCGAGCTATTGCAGAGGAACCTGAAATAATTGATCTTGGCGTCACCAACGGTGCAGCTGCTTCGGACATTCCTGCTGGAGTGTCTGATGCTGTAGGCAGTGATTCAACCATATCGGAGTTAGTACAGGAGATCAAACCACGTTATCACATTGCAGGCACGAAAGGTATATACTATGCCCGTGAACCATATACCAATGTTGATGCTGTGCATATCACCCGTTTCATAGGGCTTGCGTCTGTTGGAAATAGAGATAAACAGAAATTTATTCATGCAATCTCCCCAACACCTGCTTCCACCATGTCTTCAACTGAGATTGCCACGAAAACCACAACTACCACCTTATCACCGTACACATTTGTGGAGAAAATAACTGCTCCAATGGATTCCACAAAGAGATCCAATGATTCTGTCTCTGATTCTCAATATTGGAGATATGATGTTTCTCAAAAGCGACAAAAATATGAAACTGGACAAACTGATAAGATGTGTTTCAAATTTGTTTCGTCTGGATCTTGTCCACATGGAGAGAAGTGCCATTTTCGACATGATATAGATGCAAGGGAGCAGTGTAGGAGAGGTGTTTGCTTTGATTTTTTGAACAAGGGAAAATGTGAAAGGGGCCCAGATTGCAATTTTAAGCACAACTTGCTGGATGAAGGTGATAGACATCCTTCAAGGAGGCCTGGATCTGGCAGATCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCAAATGTGGAGACACATTTAATAGTAAGCATTGGGGAAATTTATTACTTGGCACTGGCTAAAGGTCCACTTGTTGAAGACCACGCATTGATACTACCAGTTGAGCATATGCCTAGTACCTTATCTATGTCTTCTGAATCTGAAATTGAGCTCTCTAGGTTTCAGAGCAGTCTCAAGAGTTACTGCAGGAGCCAAGAGAAGGAAGTGATATTTTTTGAGTGGGCCTCCATCCGTGGCACTCATGCCAATCTTCAGGCCATTCCCATTCCATCTTCGAAAGCAGTTATGGTTGAAAATGTTTTCAATTTAGCTGCACAAAAGTTGGGATTTGAATTTGTGGCCAAGACATTTGATAGCATTTCTGATGGAAGGAAGTTTTTGAAGACGCAAATTCATGGGGGTTCAAGCTTGTTCTATGCTCAAGTCCCAGGAGGCACAATTCTGCTGCATCATGTTGAAGAGAACGAGAAATTTCCTGCCCAATTTGGCCGTGAGGTTATGGCCGGGTTGCTCAATATGGCAGATAATGCAGATTGGAGGAATCACAAACATAGCAAAGATGAGGAAATGAAAATTGTTGAAAATTTCAAGAGCCGATTTCAAGAATATGATCCAAACTGTTAA 1782 0.4433 MAPRILLCGDVLGRLNQLFKRVSSVTKSAGPFDALLCVGQFFPDSPDQLEEFTAYIEGGSQIPLPTYFVGDYGVAAPKFLLQASKDSANRGFMMDGFKVCRNLYWLKGGGKFPLFGLSVAYLSGRKSSSVQQFGTYTEDDVDALRAIAEEPEIIDLGVTNGAAASDIPAGVSDAVGSDSTISELVQEIKPRYHIAGTKGIYYAREPYTNVDAVHITRFIGLASVGNRDKQKFIHAISPTPASTMSSTEIATKTTTTTLSPYTFVEKITAPMDSTKRSNDSVSDSQYWRYDVSQKRQKYETGQTDKMCFKFVSSGSCPHGEKCHFRHDIDAREQCRRGVCFDFLNKGKCERGPDCNFKHNLLDEGDRHPSRRPGSGRSKECWFCLSSPNVETHLIVSIGEIYYLALAKGPLVEDHALILPVEHMPSTLSMSSESEIELSRFQSSLKSYCRSQEKEVIFFEWASIRGTHANLQAIPIPSSKAVMVENVFNLAAQKLGFEFVAKTFDSISDGRKFLKTQIHGGSSLFYAQVPGGTILLHHVEENEKFPAQFGREVMAGLLNMADNADWRNHKHSKDEEMKIVENFKSRFQEYDPNC* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1417 593 Pfam Protein similar to CwfJ C-terminus 1 376 487 IPR006768 -
Pvu3g1417 593 Gene3D - 290 360 - -
Pvu3g1417 593 SMART c3hfinal6 335 360 IPR000571 GO:0046872
Pvu3g1417 593 SMART c3hfinal6 303 328 IPR000571 GO:0046872
Pvu3g1417 593 CDD MPP_CWF19_N 6 224 - -
Pvu3g1417 593 SUPERFAMILY CCCH zinc finger 304 328 IPR036855 GO:0046872
Pvu3g1417 593 Pfam Protein similar to CwfJ C-terminus 2 512 590 IPR006767 -
Pvu3g1417 593 SUPERFAMILY HIT-like 378 447 IPR036265 -
Pvu3g1417 593 ProSiteProfiles Zinc finger C3H1-type profile. 333 361 IPR000571 GO:0046872
Pvu3g1417 593 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 1 592 IPR040194 -
Pvu3g1417 593 ProSiteProfiles Zinc finger C3H1-type profile. 301 329 IPR000571 GO:0046872
Pvu3g1417 593 PANTHER CWF19-LIKE PROTEIN 1 1 592 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu3g1417 CwfJ_C_1 1.9e-35 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1417 K24939 - gmx:100782106 1029.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1417 3 32862147 32868451 Pvu3g1417 3 32862147 32868451 ECH