Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1406 ATGGATGATGTGTATGCTCTCCCTCAAGCCCCCAGAACTGATTTTCTTCGCACTCTGCTCCAATCTTTTGGCTGCACTTATGTTTGTATTCGTTTGTTCTTCTTTGATGGTTTATACAATCTACCAAACAACCAACCAAGCTCTTCTTTAGGGTCTGAAGCTGAAAGGCTTTTTCAACAGTATCGAGCTTTAACGTTTGATGTCAGTCAGGAATGTGTTCCTGGAGTTGCTTTCAGGAATCAACTTCCCTACGTACAGCTCAAACTGTTGGATCTCCTACCACTCGCATCCACCCAACTACAAAAACAATTCTTTCTGGAAGCAAGGATTGAGATGGCTGTTTTCATGGGGTGCAAAATGGGAGAAATTGAGCTTGGCTTCTCCAACATTTCTCAAGCTGACATTGAGACATCACTTAAGAATTTATTCCCAGAAGATTTCTATTTACGTTCCCAATCAATTGATCAGAATCCATATTCATCATCATCATCTTCTTTCATATCAATTTCTACAGATACCTCTAATCAACATTCATCTCTATCACTCGATATTCCAGGAATTTCCCACTCCAACTTTCCTGAAGCCCTTGGTGTGGCTCCCACACAACCTACTCCTCACCAACAAACTATTCAACCATTATCTCAACTCATTCCATTTCCAAACTATTTACGCACACCAGAGGGTGAACATGAACAAATAATAAGAACACTAATCCAAGTCATGTCTTCAACTTCCCAGCACCATCAACCCCAACCAATTTTGCCTCATAATTCTGCAATACACCCTGCAGCTTCCGATTTCTCGAGACATAGACCAGATATGATAAACTCAAATATAAAACCCCACATGGAGTCCAATTCTAGCAGGCAAAACCTGCAGAATACATCATTTCCATTGTTTAAAAACTTCAATTCAATGAGGATGAGAGAATGCAATTCTATTGAAGCAACTCATCCCATTAGTTCCCAGAAGAAGTACTATCACACGATATCGGAAAGAAAACGTCGTGAAAAACTCAGTGAGTGTTTTCAGGAACTCAGTGCACTTCTTTATCCGGAAACTAAGAAAAGTAAGGCGACGATCCTTAAAGCAGCACAGGAGACAATAATATCATTGATGGCTGATATTGAAAAGCTTAATAACAAGAGAAAACAGCAGCTGATGACAGATTTGTCAAGGGTAGAATCAAGTTCATCGGAGGAGCAAATGGTGGAGTTGCGAGTGACTGTGAGAGAACAAAGCTGTCACATTGATGTATTGATTAGCATATTGGAGTTCTTAGAAAGGGTTCAGAACGTAACCTTGATTTCCACGAACACAAACCTCCATATTACAGAAGGAGGGACAACCATTGACGAATTAACCTTCAGGCTGAGGATTATTGAGGTATGTATCCCAAACACATTCCAGTAA 1413 0.402 MDDVYALPQAPRTDFLRTLLQSFGCTYVCIRLFFFDGLYNLPNNQPSSSLGSEAERLFQQYRALTFDVSQECVPGVAFRNQLPYVQLKLLDLLPLASTQLQKQFFLEARIEMAVFMGCKMGEIELGFSNISQADIETSLKNLFPEDFYLRSQSIDQNPYSSSSSSFISISTDTSNQHSSLSLDIPGISHSNFPEALGVAPTQPTPHQQTIQPLSQLIPFPNYLRTPEGEHEQIIRTLIQVMSSTSQHHQPQPILPHNSAIHPAASDFSRHRPDMINSNIKPHMESNSSRQNLQNTSFPLFKNFNSMRMRECNSIEATHPISSQKKYYHTISERKRREKLSECFQELSALLYPETKKSKATILKAAQETIISLMADIEKLNNKRKQQLMTDLSRVESSSSEEQMVELRVTVREQSCHIDVLISILEFLERVQNVTLISTNTNLHITEGGTTIDELTFRLRIIEVCIPNTFQ* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1406 470 Gene3D - 321 396 IPR036638 GO:0046983
Pvu3g1406 470 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 322 386 IPR036638 GO:0046983
Pvu3g1406 470 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 372 IPR011598 GO:0046983
Pvu3g1406 470 Pfam Helix-loop-helix DNA-binding domain 327 372 IPR011598 GO:0046983
Pvu3g1406 470 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 461 - -
Pvu3g1406 470 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 461 IPR044658 -
Pvu3g1406 470 Coils Coil 362 382 - -
Pvu3g1406 470 SMART finulus 329 378 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1406 Pvu-Chr3 32725241 32727775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1406 3 460 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 32.101 4.14e-47 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g1406 HLH 6.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1406 - - pvu:PHAVU_003G135700g 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1406 3 32725241 32727775 Pvu3g1406 3 32725241 32727775 ECH
Pvu3g1406 3 32725241 32727775 Pvu9g2394 9 34153499 34157460 PCT