Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1400 ATGGAACCTCGTGTTGGGAATAAGTTTCGTCTGGGTCGGAAGATCGGAAGCGGCTCCTTTGGGGAGATCTATTTAGGTACTAATATTCAAACAAACGAAGAGGTCGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGTTGCTGTATGAGTCCAAGCTGTACAGAATCCTGCAGGGAGGAACTGGAATCCCAAATGTCAGATGGTTTGGAGTCGAGGGGGATTATAATGTTTTAGTGATGGATCTGCTTGGACCCAGTCTTGAAGATCTATTTAACTTCTGTAGTAGAAAGCTTTCACTAAAGACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTCATTCATTCTAAATCGTTTCTGCATCGAGATATCAAACCAGATAATTTTCTAATGGGATTAGGAAGGCGTGCAAACCAGGTTTATGCTATTGATTTTGGTTTGGCTAAGAAATACAGAGATAGCTCAACACATCAACATATTCCTTACAGGGAAAATAAGAATTTGACTGGAACTGCGAGATATGCTAGCATGAATACTCACCTTGGCATTGAGCAAAGCAGAAGAGATGATCTTGAGTCTCTTGGTTATGTTTTGATGTACTTCTTGAGAGGAAGTCTTCCTTGGCAGGGACTTAAAGCAGGAACAAAGAAACAGAAGTATGAGAAAATTAGTGAAAAGAAGGTTTCTACCTCGATTGAAGCCTTGTGTCGTGGCTATCCAACAGAATTTGCATCTTACTTCCATTACTGCCGATCATTAAGGTTTGATGATAAGCCAGATTATGCTTACCTCAAAAGAATATTCCGGGACCTTTTTATACGAGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAGTATCAACAATCACAGTTAGCCACTCCTCCAACACGGGCGATTGGTCCTGGTGCTGGAACCAGTTCTGGAATGCCCCCCGCTGTTACTAATGCTGATAGGCATACAGGAGGGGAAGAAGGGCGACCTCCTGCTTTGGTTTCAGTGGATTCCTCAAGGCGCAGAATGTCAGGGCCCATTTTAAATACTTTATCAAGTGCCAATGTCTTGGGTCAGTCAAGTGGATCATCAAGGCGGGTTGCTGTTTCCGGTAGCCGTGATGCCTTTGTTGGTACTGAGTCCGAAATTCGTACTCGCACTGCTGAAGCTAGCCCTGGAGGAGTAGCACACAGAGGTTTGAGTGCGCAAAGAAGTTCACCAATTGGATCTTCTGATCCCAAGAGAGTTGTATCATCCGGGAGAAATGCTTCTCACGGGAAAAATTATGACTCTGTACTCAGGGGCATGGAAGGTTTGCAATTAGAGAATGAAGAGAGGACCCATTATTAA 1368 0.4306 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPTRAIGPGAGTSSGMPPAVTNADRHTGGEEGRPPALVSVDSSRRRMSGPILNTLSSANVLGQSSGSSRRVAVSGSRDAFVGTESEIRTRTAEASPGGVAHRGLSAQRSSPIGSSDPKRVVSSGRNASHGKNYDSVLRGMEGLQLENEERTHY* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1400 455 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1400 455 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1400 455 PANTHER CASEIN KINASE I-LIKE 1 441 - -
Pvu3g1400 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Pvu3g1400 455 MobiDBLite consensus disorder prediction 409 432 - -
Pvu3g1400 455 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Pvu3g1400 455 MobiDBLite consensus disorder prediction 303 344 - -
Pvu3g1400 455 PANTHER CASEIN KINASE-RELATED 1 441 - -
Pvu3g1400 455 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Pvu3g1400 455 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1400 455 MobiDBLite consensus disorder prediction 386 455 - -
Pvu3g1400 455 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Pvu3g1400 455 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1400 Pvu-Chr3 32637271 32643313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1400 7 223 EF-hand Containing Proteins AT2G17890 26.667 1.18e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Pvu3g1400 Pkinase 1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1400 K02218 - gmx:100811567 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1400 3 32637271 32643313 Pvu3g1400 3 32637271 32643313 ECH
Pvu3g1400 3 32637271 32643313 Pvu9g2386 9 34070398 34078512 PCT