Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1393 ATGTCCACACCACCGTTGCCGAGATCGGTTGCCGTGGCCGTGAGTGGAGGCTCCAGCAAGGGTAGCCGGCGAGCCGTGCAGTGGGCGGTGGATAATCTCGTCCCTCAAGCCGATAGGTTCATCTTAGTTCACGTTATCTCTCCAATCACTTCAATTGCCACACCAACTGAAGAGTATATTCCTGTTTCGGAAGCAGACGCAGACGTGTTTGCAGCTTATGTGGACGATGTGAAGCAAAAATCTGAACAAATCTTTGTTCCGTTCAAGAAACTCTGCGGCTCAAACACAATGGAAACAGTGCTGCTAGAAGATGACAATGTGGCAGAAGCACTTCATAGCTTTATTTCGGAGTCCGGGGTCCAAACATTAGTGCTGGGTTCTGACTCCTCAAATTTTATAACAAGGAAGCTTAAAGGACCTGGAATACCAACTACCAGCCTAAGATGTGCTCCAGACAGCTGTGATGTGTATGTTGTAGCTAGAGACAGAATTGTTTCGAAGTTGGCCGATTTGTCATCTTCACATTCTCATGAGACTAGCCCAACAAGTTACTTCATGTCTACTAAAGTAAATGAAGTAGACAATGAGGCTGGCATTGGCAGAGAAATGTCGGGAATCAGTGCATCCACAACAGAATCCAAAATCCTAAAGAATTTCAGATTTTTATCATTATCCGAGCATAGTTACATTGGTCTGCAAACATTTAGTCGCAGGAATTCTTTTGAAAATTCTACCAAAAATGATAATCCAGAAAACTGTGGAGATGATATTGAAATGATTAGCCTCCACTCTTTTGATTCCATTGCTTCTGCACAACGTGAACAGTTAGTCATGCAACAACAAGTGGAACGGCTGCAACTGGAGTTGCAAAATACTATCGCCATGTACAAACAGGTTTGTGTGGAGCTGATTCAAGCTCAAAACCAGGCCCTTTTACTTTCTTCTGAATCTCTTGAAGAAACTAAAATAGTGAATGCTTCCCTAAAAAGAGAGGAGGTTTTAAGAAAGATTGCTTCTGAAGAGAAAACTAAGTATTTAAAAGTCGTGAAGGAACTTGAGGAGGCGAAAAATAAGTTTTCCAAAGAATCATACGAAAGGCAGATGGCTGAACTTGATGTCCTTAAAGAATCAATAGAGAAACAGAGAATTGTTGATAAATTGCTCTCAAACGACAGGAGATACAGAAAGTACACCATGGATGACATCAAGATAGCGACAAAATTCTTTTCTGAGGACTTGATGATTGGTGAAGGAGGATATGGGAAAGTTTACAAGTGTAATCTTGATCACACACCAGTAGCTGTAAAGGTTCTGCATCAGGATGCAATCAACAAGAAAGAGGAGTTTCTAAAAGAGGTTGAGATTCTTAGTCAACTGCATCACCCTAATATGGTTTTGTTAGTTGGAGCCTGTCCTGAGAATGGTTGCCTAGTTTATGAATACCTGGAAAATGGAAGTCTAGAAGACTATCTTCTCAACAAAAATAGAAAACCACCACTTCCTTGGTTTTTTCGATTTCGCATAGTTTTTGAAATGGCTTGTGGACTTTCGTTCTTGCATAATTCGAAGCCAGAGCCGATTGTCCATCGAGATATAAAGCCTGGCAACATTTTGTTAGACAGAAATTATGTGAGCAAAATTTCTGATGTTGGGCTAGCTAAACTCCTTGCAGAAGTCGTGCCTGACAATATTACAGACTACCGAGAATCAGTCCTTGCCGGTACTCTGCATTACATGGACCCAGAATATCAGAGAACTGGCACTGTTCGACCAAAATCAGATGTATATGCATTTGGAGTTATAACTCTCCAATTAATAACTGGTCGCCATGCACGTGGGCTCATTTTGATTGTTGAAGATGCAATTAGAAATGGCTCCTTCCGTGATTTTTTAGATTCATCAGCTGGAGATTGGCCATTGGATGAGACAGTGGAATTGGCTCAAATTGCTCTTAAATGCACAGCACTTAGATGCAGAGATAGACCAGAACTTGATACTGAAGTTCTTCCACTGCTCGAAAGATTTTCTAATGCGGCAAATGCTAGTGCAAGGATAGGAAGAAATAGTGTAAGTGCACCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCATATATTGCTGCGGATGGGTTCACTTATGAGTACAGAGCAATCAAGGCATGGCTCAGCAAACACAATGTGTCACCCATGACAAAGCTTAAACTTCAGCATTCTGTGTTGACTCCGAACCATACTCTACGTTCTGCCATTCAGGAGTGGAAGTCAGGAATCACCTTTTGA 2292 0.4158 MSTPPLPRSVAVAVSGGSSKGSRRAVQWAVDNLVPQADRFILVHVISPITSIATPTEEYIPVSEADADVFAAYVDDVKQKSEQIFVPFKKLCGSNTMETVLLEDDNVAEALHSFISESGVQTLVLGSDSSNFITRKLKGPGIPTTSLRCAPDSCDVYVVARDRIVSKLADLSSSHSHETSPTSYFMSTKVNEVDNEAGIGREMSGISASTTESKILKNFRFLSLSEHSYIGLQTFSRRNSFENSTKNDNPENCGDDIEMISLHSFDSIASAQREQLVMQQQVERLQLELQNTIAMYKQVCVELIQAQNQALLLSSESLEETKIVNASLKREEVLRKIASEEKTKYLKVVKELEEAKNKFSKESYERQMAELDVLKESIEKQRIVDKLLSNDRRYRKYTMDDIKIATKFFSEDLMIGEGGYGKVYKCNLDHTPVAVKVLHQDAINKKEEFLKEVEILSQLHHPNMVLLVGACPENGCLVYEYLENGSLEDYLLNKNRKPPLPWFFRFRIVFEMACGLSFLHNSKPEPIVHRDIKPGNILLDRNYVSKISDVGLAKLLAEVVPDNITDYRESVLAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGRHARGLILIVEDAIRNGSFRDFLDSSAGDWPLDETVELAQIALKCTALRCRDRPELDTEVLPLLERFSNAANASARIGRNSVSAPSQYYCPILQEIMDDPYIAADGFTYEYRAIKAWLSKHNVSPMTKLKLQHSVLTPNHTLRSAIQEWKSGITF* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1393 763 ProSitePatterns Protein kinases ATP-binding region signature. 415 436 IPR017441 GO:0005524
Pvu3g1393 763 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Pvu3g1393 763 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 9 760 - -
Pvu3g1393 763 ProSiteProfiles U-box domain profile. 691 763 IPR003613 GO:0004842|GO:0016567
Pvu3g1393 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 692 761 IPR013083 -
Pvu3g1393 763 Coils Coil 268 288 - -
Pvu3g1393 763 Gene3D HUPs 8 159 IPR014729 -
Pvu3g1393 763 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 140 - -
Pvu3g1393 763 PANTHER OS02G0152300 PROTEIN 9 760 - -
Pvu3g1393 763 CDD RING-Ubox_WDSUB1_like 696 736 - -
Pvu3g1393 763 Coils Coil 335 381 - -
Pvu3g1393 763 ProSiteProfiles Protein kinase domain profile. 409 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1393 763 SMART Ubox_2 695 757 IPR003613 GO:0004842|GO:0016567
Pvu3g1393 763 CDD STK_N 9 161 - -
Pvu3g1393 763 SMART serkin_6 409 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1393 763 SUPERFAMILY RING/U-box 686 758 - -
Pvu3g1393 763 Gene3D Phosphorylase Kinase; domain 1 387 481 - -
Pvu3g1393 763 SUPERFAMILY Protein kinase-like (PK-like) 392 664 IPR011009 -
Pvu3g1393 763 Pfam U-box domain 693 758 IPR003613 GO:0004842|GO:0016567
Pvu3g1393 763 Pfam Protein tyrosine and serine/threonine kinase 414 665 IPR001245 GO:0004672|GO:0006468
Pvu3g1393 763 Gene3D Transferase(Phosphotransferase) domain 1 482 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1393 Pvu-Chr3 32565767 32571105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1393 9 759 Plant U-box Gene Family AT5G57035 53.048 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pvu3g1393 PK_Tyr_Ser-Thr 1.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1393 - - vun:114178082 1370.53