Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1387 ATGGTTTGGTTTCAATGCGAAGATTGTGGAGACAACCTCAAAAAACCCAAGTTGTCGGGTCACTTTCGGACTTGCTCTGCTTACAAATTGTCGTGCATTGACTGTGGGGAAATATTTGGGCGTGACACCGTTCAGGATCACACACAGTGCATTACAGAAGCTGAAAAGTATGGTCCAAAAGGCCAAGGAAAAACTTTGAGTGCTGCAACTGCCACGCCTAACAAGGATAACAAACAAAGGCCTGAAGTTGATATTAATGTGGGGTTATCTGAGCGGCCTCCTTGGTTTTGTAGTCTTTGCAATACAAAAGCTACAAGTAAGCAAGCACTTCTTCTCCATGCTGATGGAAAGAAGCACAGGGCAAAGGCGAGAGCATTCCATGCTTCAAAGCAGCAACCAATCCAGGAAGATAAATATGCCACTGATGATGCTAAGGCTGTTGTGGAGACTGGTCCTAATGATGAGGCGAGAGATGACAAAAATGTCGAGCTGCCAAAATTGCAGAAGTCTTCTACAGAAAATGATTCAAGACCAGGGAATGAAATTTCTTCAGCAAAGAAAAAGAGGAAACTTGAAGCATTGGAGGATGACCTTGTTAAAAAAAGCAAAAATAACACTTTAGTTGATATGGGAAATGGAGAAGTAATTCAGGGTGAAAAAGCAACAGGAGAGAGCAATTTGAAGAAAGAAGGGATGTTAAAACCTCACTGTACAAGTGCTGTCAAGAATAAAATAAAGTGGAAGAAATTTATTAAATCAGCCTTGAAATCTCATCCTGATGGAATTTTGAAGATGAAGAAACTTAGAAAAGTTGTCCTCAAAGCACTCCAGGAATCTGGCATTGCAGTGGATGAAACTGAATTGAGTGAGGAGCTTGAGAAGAAGATCAATTCCAGCTCCAGATTTGCGGTCGAGAACAAGTATGTGCGATTGATGGCCAAAGATTGA 948 0.4135 MVWFQCEDCGDNLKKPKLSGHFRTCSAYKLSCIDCGEIFGRDTVQDHTQCITEAEKYGPKGQGKTLSAATATPNKDNKQRPEVDINVGLSERPPWFCSLCNTKATSKQALLLHADGKKHRAKARAFHASKQQPIQEDKYATDDAKAVVETGPNDEARDDKNVELPKLQKSSTENDSRPGNEISSAKKKRKLEALEDDLVKKSKNNTLVDMGNGEVIQGEKATGESNLKKEGMLKPHCTSAVKNKIKWKKFIKSALKSHPDGILKMKKLRKVVLKALQESGIAVDETELSEELEKKINSSSRFAVENKYVRLMAKD* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1387 315 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 312 IPR039999 GO:0003677
Pvu3g1387 315 Gene3D - 1 50 - -
Pvu3g1387 315 Pfam Zinc-finger of C2H2 type 95 119 - -
Pvu3g1387 315 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Pvu3g1387 315 SMART ZnF_U1_5 92 126 IPR003604 GO:0003676|GO:0008270
Pvu3g1387 315 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Pvu3g1387 315 MobiDBLite consensus disorder prediction 123 189 - -
Pvu3g1387 315 SUPERFAMILY beta-beta-alpha zinc fingers 85 127 IPR036236 -
Pvu3g1387 315 Coils Coil 184 204 - -
Pvu3g1387 315 Gene3D Classic Zinc Finger 89 131 - -
Pvu3g1387 315 MobiDBLite consensus disorder prediction 58 82 - -
Pvu3g1387 315 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
Pvu3g1387 315 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Pvu3g1387 315 MobiDBLite consensus disorder prediction 136 166 - -
Pvu3g1387 315 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1387 54 230 C2H2 Transcription Factor Family AT2G19380 34.270 2.12e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1387 K15263 - gmx:100790272 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1387 3 32464286 32467835 Pvu3g1387 3 32464286 32467835 ECH