LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu3g1377	ATGCTTACGTGCATAGCTCGTCCGAAGAAACCTGATGAGTCGGATCCAAACAGTGGGACAAGCGCTGCTAAATCGCAAGCCATCAAATCCCTCACCTCTCAGATAAGGGATATGGCGTTGAAGGCTTCGGGAGCTTACAAGCATTGCGCTCCGTGCACGGGGCCAGCGGCTCAGGGGCGAGTGCGGACCAACACGGAGTCGGACGCGGACTCGGACCGGTTCCGGTGGTCGTACCGGCGGACAGGGAGTTCGAGCTCGACGACGACTCGGACGTGGGGGAAGGAGATGGAGGCGCGGCTGAAGGGGATATCGAGCGGCGAGGGGACGCCGAACTCCGCGAGCGGCCGTCGAGCGGAGCCGTTGGTGCTGTTCGTCGAAGAGAACGAGCCGAAGGAGTGGGTTGCGCAGGTGGAGCCTGGCGTTTTGATTACGTTCGTGTCGTTGCCAGGTGGCGGTAATGATCTCAAACGCATACGATTCAGTCGAGAGATGTTCAATAAATGGCAAGCACAAAGGTGGTGGGCAGACAACTACGACAAAGTTATGGAGCTTTACAATGTTCAAAGGTTTAGCCGCCAAGCATTCCCTCTTCCGACGCCACCAAGATCTGAAGATGAGAGCACAAAGCTTGAGTCAGCAGAAGCCAGTCCTGTAACTCCTCCACTGACCAGGGAACGGTTACCTCGTAATATTTACCGACCAACAGGGATGGGAATGGGATACTCATCCTCAGATTCCTTTGATCATCAGTCAATGCAATCCCGGCATTTCTACGACTCAAATGGTTTGAACTCTACCCCAAAAGTGTCCACTATTAGTGCGGCCAAGACGGAGATATCATCAATGGATGCTTCTATCAGAAGTAGCTCATCCAGAGAGGCTGATCGCTCGGGTGATTTATCAATCAGCAATGCTAGTGATTTGGAGACTGAGTGGGTTGAACAGGATGAACCTGGGGTTTACATTACAATCAGAGCATTGCCAGGTGGCGCAAGGGAGCTCAAACGAGTCAGGTTCAGCCGAGAAAAATTTGGAGAGATGCATGCTAGATTATGGTGGGAGGAGAACCGTGCCAGAATACATGAACAATACTTGTGA	1098	0.5291	MLTCIARPKKPDESDPNSGTSAAKSQAIKSLTSQIRDMALKASGAYKHCAPCTGPAAQGRVRTNTESDADSDRFRWSYRRTGSSSSTTTRTWGKEMEARLKGISSGEGTPNSASGRRAEPLVLFVEENEPKEWVAQVEPGVLITFVSLPGGGNDLKRIRFSREMFNKWQAQRWWADNYDKVMELYNVQRFSRQAFPLPTPPRSEDESTKLESAEASPVTPPLTRERLPRNIYRPTGMGMGYSSSDSFDHQSMQSRHFYDSNGLNSTPKVSTISAAKTEISSMDASIRSSSSREADRSGDLSISNASDLETEWVEQDEPGVYITIRALPGGARELKRVRFSREKFGEMHARLWWEENRARIHEQYL*	366

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pvu3g1377	365	MobiDBLite	consensus disorder prediction	1	30	-	-
Pvu3g1377	365	Pfam	Transcription factor regulating root and shoot growth via Pin3	309	364	IPR013591	-
Pvu3g1377	365	Pfam	Transcription factor regulating root and shoot growth via Pin3	131	185	IPR013591	-
Pvu3g1377	365	PANTHER	PROTEIN BREVIS RADIX-LIKE 1	1	365	IPR044532	-
Pvu3g1377	365	PANTHER	PROTEIN BREVIS RADIX-LIKE 4	1	365	-	-
Pvu3g1377	365	MobiDBLite	consensus disorder prediction	196	226	-	-
Pvu3g1377	365	MobiDBLite	consensus disorder prediction	51	70	-	-
Pvu3g1377	365	ProSiteProfiles	BRX domain profile.	131	186	IPR013591	-
Pvu3g1377	365	MobiDBLite	consensus disorder prediction	15	30	-	-
Pvu3g1377	365	ProSiteProfiles	BRX domain profile.	310	365	IPR013591	-

Showing 1 to 10 of 11 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu3g1377	Pvu-Chr3	32363578	32369654	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu3g1377	1	365	Major Intrinsic Protein MIP	AT1G31880	44.216	7.45e-91	275

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu3g1377	-		-	gmx:100794109	670.618

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu3g1377	3	32363578	32369654	Pvu3g1377	3	32363578	32369654	ECH
	Pvu3g1377	3	32363578	32369654	Pvu9g2368	9	33845161	33851491	PCT

Showing 1 to 2 of 2 entries

Previous1Next