Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1374 ATGGGTGATTTCCAAGGTCCCTTCATATTGTCACCCCCTCCATCACCCTCTTCCTCGGATAAGTCCAGCACAACCATGTTATACTATGGCCTTGTAGTGGTGGGGGTTGCAGCTATGGCATTAGCCCTGTACAACTTCATCATCATCAGGAGAAGCAGGAGGCAGTCACAAGTTGAGGAGGTGGTGGTGATGGAAAGTAGAATAGAGAACTGTGAAAGGAACTTGAACTTGGTGTCAAGGTTCAAGTACAAGAAAGAAGGAGTTGAGGGTTATGATGATGAATGTTCAGTTTGCTTATCGGGTTTTGAAGAAGGAGAAGAAGTTGGGAAGCTGCCACAGTGCAAGCACTGGTTCCACGCTCCATGCATACACATGTGGCTCTATTCTCACTTCGACTGCCCAATTTGTCGAACACCTGTTGTTCGTTTTTCGCACCACAACTCTGGTCCGGCATTGCTTGAATCCGCCACTGGTGTGTCCCTATGA 486 0.4774 MGDFQGPFILSPPPSPSSSDKSSTTMLYYGLVVVGVAAMALALYNFIIIRRSRRQSQVEEVVVMESRIENCERNLNLVSRFKYKKEGVEGYDDECSVCLSGFEEGEEVGKLPQCKHWFHAPCIHMWLYSHFDCPICRTPVVRFSHHNSGPALLESATGVSL* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1374 161 SUPERFAMILY RING/U-box 85 143 - -
Pvu3g1374 161 Pfam Ring finger domain 93 137 IPR001841 -
Pvu3g1374 161 SMART ring_2 95 136 IPR001841 -
Pvu3g1374 161 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 11 146 - -
Pvu3g1374 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 145 IPR013083 -
Pvu3g1374 161 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 146 IPR044675 -
Pvu3g1374 161 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1374 Pvu-Chr3 32328065 32328550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1374 14 140 C3H Transcription Factor Family AT2G42360 35.556 2.56e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1374 - - vun:114177506 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1374 3 32328065 32328550 Pvu3g1374 3 32328065 32328550 ECH
Pvu3g1374 3 32328065 32328550 Pvu9g2366 9 33824314 33825355 PCT