Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1369 ATGGGGAGAAGCCCTTGTTGTTCAAAGGAGGGTTTGAATAGAGGTGCTTGGACAGCTCATGAAGACAAAATCCTCAGAGAATACATTAGGGTCCATGGGGAAGGAAGATGGAGAAACCTTCCCAAAAGAGCAGGTTTGAAAAGATGTGGGAAAAGTTGCAGACTTCGATGGCTCAATTATCTCAGACCTGATATTAAGAGAGGCAATATAACCTCAGATGAAGAAGAGCTCATTATCAGACTCCACAAACTCCTGGGAAACAGATGGTCTTTAATAGCAGGGAGGCTTCCAGGACGAACAGACAATGAAATAAAGAATTATTGGAACACCAATTTAGGTAAAAAGGTGAAAGATGGTCACAAAACCTCAACCACTTGTCGTAGACCAAGCAATGAAAACAGCACACAGAATCCAATGTCTCTTCCTAAAGATTCCCACCTCGTCCGTACAAAAGCCACCAAGTGCACTAAGGTGTTTTTCCCTCACCCATCAATGCTGCAACTGCCCAACAAGTCCGAGGAAGAAGAAGAACATGAAGAAGAAGAAGAAGAAAGGATTGTGGATGCTGTAGTAAGTGACCAAATGGAACTCACTACGAACAACAATGGGTTCCTGTCGTTTCCCAATGAAGAAAAAGAGCTCTCAACAGACATGCTCACAGATTTCAACGTGGGGGATATCTGCTTGTCTGATCTTCTGGACTCCGATTTCTCCAATATCTACAACTTCACCTGTACTACCAACGCTGTTCACAACAACAACAACGACAACCAGTTATTCTCTCCTTGTTCCGACCAACCTTATCCCGTGTGCTCTGATGAACTTCTCAAGAACTGGAAGCAAAGCAATTTTGCAGACGAAACCAATGCTTCAAACAACCTTCATTCTTTCATTTCGTTCCTCGAGACCAGCGAGGAAAGAGTAGGACAATCATAA 936 0.4327 MGRSPCCSKEGLNRGAWTAHEDKILREYIRVHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNITSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDGHKTSTTCRRPSNENSTQNPMSLPKDSHLVRTKATKCTKVFFPHPSMLQLPNKSEEEEEHEEEEEERIVDAVVSDQMELTTNNNGFLSFPNEEKELSTDMLTDFNVGDICLSDLLDSDFSNIYNFTCTTNAVHNNNNDNQLFSPCSDQPYPVCSDELLKNWKQSNFADETNASNNLHSFISFLETSEERVGQS* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1369 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu3g1369 311 MobiDBLite consensus disorder prediction 126 143 - -
Pvu3g1369 311 CDD SANT 16 61 IPR001005 -
Pvu3g1369 311 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pvu3g1369 311 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu3g1369 311 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 258 - -
Pvu3g1369 311 PANTHER TRANSCRIPTION FACTOR TT2 1 258 - -
Pvu3g1369 311 MobiDBLite consensus disorder prediction 118 143 - -
Pvu3g1369 311 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu3g1369 311 Gene3D - 14 66 - -
Pvu3g1369 311 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pvu3g1369 311 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu3g1369 311 CDD SANT 71 112 IPR001005 -
Pvu3g1369 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu3g1369 311 SMART sant 66 114 IPR001005 -
Pvu3g1369 311 SMART sant 13 63 IPR001005 -
Pvu3g1369 311 Gene3D - 70 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1369 Pvu-Chr3 32237134 32238888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1369 1 174 MYB Transcription Factor Family AT4G38620 57.865 1.82e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu3g1369 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1369 K09422 - gmx:100802704 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2359 9 33726547 33729388 Pvu3g1369 3 32237134 32238888 PCT