Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1366 ATGATGAATGGAAGGAACAGGTTCCCCTTCACTCCTTCCCAGTGGCAAGAGCTTGAACACCAAGCCCTCATCTACAAATACATGGCTTCAGGTATCTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGAACCCACTTGGACTCTCCTCTCTCCTCAAGGCTCCTGCCTCACCAGTCTCAACACTTTGGGTGGAACTATTTGCCAATGGGGTTGGGGAGGAAGATAGACCCTGAGCCAGGGAGATGTAGGAGAACAGATGGGAAGAAATGGAGATGCTCAAAGGAGGCATATCCAGATTCAAAGTACTGCGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCAACGACAGTAACAACAATCACAGATGCCTCAACCCCCACAATCTTATCAATCACCAAAAACAGTTCTGCACTCTCCCCAACCACTCATTCTCTCTCCGTGTCCTCTCATGACACTTACCATCACCACAACCCTCAACATTCCTCCCACTCCTTCCTCTATCATCATCCCTCAAGACCCTCTTCCGGTGTTGCTTTGTCATTTCAAGACAACAGTGCCCCCTTGTTTCTCGACACTGCTTCTTGCTCTCAGAATAACAACACTGACTGCAGGTATGTGTATGGACTGAAAGAGGAAGTGGATGAGCATGCCTTCTTCACGGAACCTTCTGGAACAATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCGTGGCAACTCACACCACTGACCATAAGCTCTTCCTCTTCAAAACAGAGGAGTTGCTCTGGTTTGTCCAACGACAACAACGAGTACTCCTACTTGCAACTTCAGAGCCTCAGTGGCAACAATTCAAAACAGCCACAGCAAGATCAGGGTTGCTACATATCAGGAGCTGGCAGTGATATCAAGTGTGAAACTTTCATGAAACTTGGGAAAGAAGAACCTCAGAAAACTGTTCATCGCTTCTTCGATGAATGGCCCCCCAAGAGCAGAGGATCATGGCTAGATTTGGATGACAAATCATCCACCACCCAGCTTTCAATTTCCATTCCCACTTCGTCTCATGATTTTGCAACTTTCAGTTCAACAACCCAACGAGATGGTTGA 1125 0.472 MMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRTHLDSPLSSRLLPHQSQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPTTVTTITDASTPTILSITKNSSALSPTTHSLSVSSHDTYHHHNPQHSSHSFLYHHPSRPSSGVALSFQDNSAPLFLDTASCSQNNNTDCRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSKQRSCSGLSNDNNEYSYLQLQSLSGNNSKQPQQDQGCYISGAGSDIKCETFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSSHDFATFSSTTQRDG* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1366 374 Pfam WRC 78 120 IPR014977 -
Pvu3g1366 374 PANTHER - 4 350 IPR031137 GO:0005634|GO:0006351|GO:0032502
Pvu3g1366 374 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pvu3g1366 374 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Pvu3g1366 374 PANTHER GROWTH-REGULATING FACTOR 5 4 350 - -
Pvu3g1366 374 MobiDBLite consensus disorder prediction 150 181 - -
Pvu3g1366 374 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pvu3g1366 374 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1366 Pvu-Chr3 32178603 32181228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1366 7 244 GRF Transcription Factor Family AT3G13960 46.442 2.07e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Pvu3g1366 WRC 7.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1366 - - gmx:100783524 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1366 3 32178603 32181228 Pvu3g1366 3 32178603 32181228 ECH
Pvu3g1366 3 32178603 32181228 Pvu9g2357 9 33698851 33700993 PCT