Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1340 ATGTCGACCTCGTCGGAGTATTCAGGATTTTCCGGCAACCAGACGGCGAATTCGTCGTCGGAGAAGTCCACGTTCTCTCAGACTTGCAGTCTATTGAGCCAATACCTCAAGGAAAACGGTACCTTCGGAGACCTTACCCTCGGAATGACATGCACCGTCGAAGCAAACGCTTCTCCTTCTGAAACATCGTGTCACCCTGCAACAACCATGGAGTTGTTTCCCACCATTTTGACACAACGGAACCCTTCTGCTGCTGTGGATTTCCTCTCTCCCTCGCGTGCATATCCTCACTACTCAGAGCTTAATAAATCAAGTGGTTTCAAGCCTGTGGAGAAGGAGCCTAAAGCTTCTCAGATGACAATCTTTTATGCTGGACAAGTGGTTGTGTTTAATGATTTTCCCCCTGAAAAAATGGAGGAGATAATGTCACTGGCCAGGAAGGGAATGTCCCAAAGCCCAAACTACCATGCATATGCTCACACTAGAAACCAACCATCCTCCATGGCAATTGTTCGTGGTCTTCCAATTGCGAGGAAAGTTTCACTTCATCGTTTTTTCGAGAAGAGGAAACATAGAATTTCTGCCAATGCGCCATATCAAATAAACAAACCCAACTCTGCTCCAAATAAGCTCGCCGCAGAATCCATGCCATGGCTTGGATTTGGTGTTCCATCAAAACAAATCTGA 687 0.4643 MSTSSEYSGFSGNQTANSSSEKSTFSQTCSLLSQYLKENGTFGDLTLGMTCTVEANASPSETSCHPATTMELFPTILTQRNPSAAVDFLSPSRAYPHYSELNKSSGFKPVEKEPKASQMTIFYAGQVVVFNDFPPEKMEEIMSLARKGMSQSPNYHAYAHTRNQPSSMAIVRGLPIARKVSLHRFFEKRKHRISANAPYQINKPNSAPNKLAAESMPWLGFGVPSKQI* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1340 228 PANTHER PROTEIN TIFY 10A-LIKE 17 210 - -
Pvu3g1340 228 ProSiteProfiles Tify domain profile. 112 147 IPR010399 -
Pvu3g1340 228 SMART tify_2 112 147 IPR010399 -
Pvu3g1340 228 MobiDBLite consensus disorder prediction 1 21 - -
Pvu3g1340 228 Pfam tify domain 113 145 IPR010399 -
Pvu3g1340 228 Pfam Jas motif 175 200 IPR018467 -
Pvu3g1340 228 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 17 210 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1340 Pvu-Chr3 31709149 31711390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1340 1 222 Tify Gene Family AT1G19180 38.824 1.70e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pvu3g1340 tify 8.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1340 K13464 - gmx:100802800 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1340 3 31709149 31711390 Pvu3g1340 3 31709149 31711390 ECH
Pvu3g1340 3 31709149 31711390 Pvu9g2328 9 33382045 33384461 PCT