Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1336 ATGAAGGCTCCATCCAATGGTTTCTTGCCTAATTCTGGAGAAGGGGAAAGGAAGACGATAAATCCAGAGTTATGGCATGCTTGTGCTGGACCTTTGGTGTCTTTGCCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCCCAAGGACACAGTGAACAAGTTGCAGCTTCCATGCAAAAGGAGACTGACTTCATTCCCAGTTACCCTAACCTTCCCTCTAAGTTGATTTGCATGCTTCACAATGTTGCCTTGCATGCTGATCCTGAAACTGACGAGGTCTATGCACAGATGACTCTTCAACCTGTAAACAAATATGAGAAAGAAGCAATACTGGCATCAGACATGGGTCTCAAACAATGCCGTCAACCTACTGAGTTCTTTTGCAAAACACTTACAGCTAGTGACACTAGCACTCATGGTGGATTTTCTGTGCCACGTAGAGCAGCTGAGAAAATATTTCCAACCTTGGATTATTCAATGCAACCTCCAGCTCAGGAGCTTGTAGCTAAGGATTTGCACGATAATACATGGCCATTCAGACATATTTATCGAGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTATTTGTCAGCACAAAAAGACTGTTTGCAGGAGATTCTGTTCTTTTTATCAGAGATGAAATGAAGCATCTTCTTTTAGGTATAAGGCGTGCTAACAGACAGCAATCAGCACTCTCTTCATCGGTAATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCTGCTCATGCTGCTGCAAACAACAGTCCATTTACTATATTTTACAATCCAAGGGCTAGCCCCTCTGAATTTGTTGTTCCACTGGCCAAGTATAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACCGAGGAGTCTGGAGTACGCAGATATATGGGAACAATCACTGGGATCAGTGACTTGGATCCTGCCCGATGGAAAAACTCACAATGGCGCAATATTCAGGTTGGATGGGATGAATCAACAGCTGGCGAGCGCCCCAGTAGAGTTTCAATTTGGGAAGTTCAACCTGTAGTTACTCCTTTTTATATTTGTCCTCCTCCATTTTTTAGGCCCAAGTTCCCCAGGCAACCAGGAATGCCAGATGACGAGTCAGATATGGAAAATACTTTAAAGAGAGGTATGCCCTGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCAAGTTCAATCTTTCCTGGTTTTAGTTTAGTGCAGTGGATGAACATGCAACCGAATAATCATCTCTCAGCGGCTCAATCAGGATGTTTCCCATCCATGCTTCCATCTAATACCCTTCATGGTAACCTTGCCACCGAAGATCCATCCAAGTTATTGAGCTTTCAAGCTCCTGTTCTCTCTTCCCCAAGTCTTCAATTAAACAAACCCAATCTACCAAATCAAATCAACCAGTTGCAACAGTCCCCAGTGTCATGGCCTCAGCAGCAACAACAGCAGCAACAGTTGCAGCAACAGCAGCAGCAACAGTTGCAGCAACAACAGCTGCAGCAGCAGCAACAACAGCTGCAGCAGCAGCAACAACAACAGCAGCTTCAGCAACAACAACAGCTTCAGCAACAACAACAGCTTCAGCAACAACAGCAGCAGCAATTACAGTCATTGTTGCAGATACCAATGAACCATCTCCAGCAACAGAGGCAACAGCAGCTGCCTGAGCCACAAAACCTGTCATTGCTGCAGCAACTGCCTCAACAGCTAGGACAGCAGCCCCAGAAACAGCAACAGCCAAGTCAACATGCTACACTTATGCATAATGGGGTAGTTGCTTCTAACCAGATTACAAGTCAGTTTGTACAACCACCGATGGCATATGGTCAGCTTCAGCAACAACAATTACTCTCAGGAGGAATCCAACCCCAGCAAGGTATCCAATCAGCTAGTAAGAATACATTCCCATTGACATCCTTATCACATGACTCACAGTTTCAGCAACAGATAGACCAGCAAGCTAACCTCTTACTGAGGCAACAACAACAACAACAGACACAATTGCAACAATCTCCACTGCAGTTGCTGCAACATAACCTGCCACAGATACCATCACAACAACAACTGCCTGCCTCCCAAATGTTACAGCCAAATTCCTCAGAGCAACAACTCCACCTACAGTTGCTACAGAAATTGCAGCACCAACAACAACAGCAACATCTTTCTACGTCCACCCCACTATTGCAGTCTCAGCTTCTACCACAACAAAATACTCACCAACAAAACCAGCAATTACCACAGACTCAACCACCTGTATCACATCATCAACCTCATCAGGTTGCCAATAATGCATTGTCAACAGAGAAGCTTCTTAACAGCAACAACTTCTCTTCTTCATCTCTTATGCAATCACAACAGATTCCTATGAACCAATCCCAGAATACACAGAAATCACTTACCATCACCAGAGCTCCCTCTACACTAACAGATGGAGATGCCCCATCATGCTCAACTTCTCCATCTACTAATAACTGCCAGGTGTCTCCTCCAAACCTCCTGAAAAGAAATCAGCAACTACCAGCTACATTAGGGGGAAGTTTGATAGTTGAGCCCACTAGTAATCTGATACAGGAGCTTCACAGTAAGCCCGACATGCAGAACAAACATGACTTGCTCAATTTAAAAGGACCTGACCAGTTGAAGTATAAAGGGATAATCACTGATCAGCTGGAAGCTTCTTCTTCTGGAACATCTTACTGCCTTGATCCTGGAAATGTCCAACAGAACTTGCCACTTTCGAACTTCTGCATGGAAGGGGATGCCCAATCACACCCAAGAAACAGTTTACCATTTGACACTAATCTGGATGATCTAACCCCTGATACTATGCTTTTAAGGGGATATGACTCTTCAAAAGATCTTCAAAATTTGTTGTCTAACTATGGTGGTGCTCCTAGAGACATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTCCTTTGGAGTGCCAAACATGCCTTTCAAGCCTGGTTGCTCAAGTGACGTTGTCATCAATGAAGCTGGAGTTCTGAATAATAATGGCTTGCGGGCCAACCAACCTCCACCTCCACGAATGCGGACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGATGTTACCCGTTACAGGGGATATGATGAACTTCGGCATGATTTGGCTAAAATGTTTGGGATTGAAGGGCAGCTAGATCCTCAAAGGACTGACTGGAAATTAGTATATGTGGATCATGAAAATGATATCCTTCTTGTTGGTGATGACCCTTGGGATGAATTCGTAAGCTGTGTGCAGAGCATAAAGATATTGTCACATTCAGAAGTGCAACAAATGAGCTTGGATGGGGATTTGGGTGGTACTGTTCCAATCCCTAATCAAGCTTGCAGTGGTACAGACAGTGGCAATGCATGGAGAGGACAATATGAAGATAACTCAGCTGCCTCTTTTAACAGGTAA 3492 0.4427 MKAPSNGFLPNSGEGERKTINPELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQCRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPTLDYSMQPPAQELVAKDLHDNTWPFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEMKHLLLGIRRANRQQSALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPARWKNSQWRNIQVGWDESTAGERPSRVSIWEVQPVVTPFYICPPPFFRPKFPRQPGMPDDESDMENTLKRGMPWLGDDFGMKDASSSIFPGFSLVQWMNMQPNNHLSAAQSGCFPSMLPSNTLHGNLATEDPSKLLSFQAPVLSSPSLQLNKPNLPNQINQLQQSPVSWPQQQQQQQQLQQQQQQQLQQQQLQQQQQQLQQQQQQQQLQQQQQLQQQQQLQQQQQQQLQSLLQIPMNHLQQQRQQQLPEPQNLSLLQQLPQQLGQQPQKQQQPSQHATLMHNGVVASNQITSQFVQPPMAYGQLQQQQLLSGGIQPQQGIQSASKNTFPLTSLSHDSQFQQQIDQQANLLLRQQQQQQTQLQQSPLQLLQHNLPQIPSQQQLPASQMLQPNSSEQQLHLQLLQKLQHQQQQQHLSTSTPLLQSQLLPQQNTHQQNQQLPQTQPPVSHHQPHQVANNALSTEKLLNSNNFSSSSLMQSQQIPMNQSQNTQKSLTITRAPSTLTDGDAPSCSTSPSTNNCQVSPPNLLKRNQQLPATLGGSLIVEPTSNLIQELHSKPDMQNKHDLLNLKGPDQLKYKGIITDQLEASSSGTSYCLDPGNVQQNLPLSNFCMEGDAQSHPRNSLPFDTNLDDLTPDTMLLRGYDSSKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMPFKPGCSSDVVINEAGVLNNNGLRANQPPPPRMRTYTKVQKRGSVGRCIDVTRYRGYDELRHDLAKMFGIEGQLDPQRTDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSHSEVQQMSLDGDLGGTVPIPNQACSGTDSGNAWRGQYEDNSAASFNR* 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1336 1163 CDD B3_DNA 125 226 IPR003340 GO:0003677
Pvu3g1336 1163 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 551 1151 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu3g1336 1163 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 478 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu3g1336 1163 MobiDBLite consensus disorder prediction 793 812 - -
Pvu3g1336 1163 Coils Coil 495 556 - -
Pvu3g1336 1163 MobiDBLite consensus disorder prediction 820 844 - -
Pvu3g1336 1163 MobiDBLite consensus disorder prediction 1140 1163 - -
Pvu3g1336 1163 SMART B3_2 126 228 IPR003340 GO:0003677
Pvu3g1336 1163 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Pvu3g1336 1163 Pfam AUX/IAA family 1035 1122 IPR033389 -
Pvu3g1336 1163 ProSiteProfiles PB1 domain profile. 1036 1119 IPR000270 GO:0005515
Pvu3g1336 1163 PANTHER AUXIN RESPONSE FACTOR 19 551 1151 - -
Pvu3g1336 1163 PANTHER AUXIN RESPONSE FACTOR 19 1 478 - -
Pvu3g1336 1163 Gene3D - 124 227 IPR015300 -
Pvu3g1336 1163 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu3g1336 1163 Gene3D - 1033 1124 - -
Pvu3g1336 1163 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Pvu3g1336 1163 MobiDBLite consensus disorder prediction 750 774 - -
Pvu3g1336 1163 SUPERFAMILY CAD & PB1 domains 1049 1114 - -
Pvu3g1336 1163 Gene3D - 289 360 - -
Pvu3g1336 1163 SUPERFAMILY DNA-binding pseudobarrel domain 117 255 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1336 Pvu-Chr3 31626370 31634158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1336 1 490 B3 DNA Binding Superfamily AT5G20730 79.559 0.0 789
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu3g1336 AUX_IAA 5.4e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1336 K14486 - gmx:100805456 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1336 3 31626370 31634158 Pvu3g1336 3 31626370 31634158 ECH
Pvu3g1336 3 31626370 31634158 Pvu9g2322 9 33279497 33287731 PCT