Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1313 ATGGCTATTGCATCTCCTAAACTTTTCCTCCTTCTTTTAACATTCCTCTTCTCACATACTATAGCTGTTGAGTCCTTCAATGCTTTCACAATCCCAACATCCCATGCAAACTTTTCTTCCTTAAACAGAACAAATTTATTTCATGAAGTTGGGTTCAATTCATCCAAGCTTTCTATCTCAATAACCATAAATCCAAACATCATCAACACCCTTCTTCAGTCCCTCCAAGCAGCAATAACCGATGCCACAAAACTGTCTGATCTTTTAAACAATGCAGGACACTCAAGCATCATAGAGAACAAAATAGGAGCAGTCCAAGACTGTAGAGAACTTCAACAATCCACTTTAGCTTCCTTAGAACGATCGCTTTCAGGGATCCGTTCCCAAGACTCCAGAAAAGTAGTTGATGCGAGAACCTACCTCAGTGCAGCCCTCACCAACAAAGGCACGTGTCTAGAGAGCTTAGATTCTGCTTCGGGTACCCTTAAGCCAGTTCTGGTGAACTCTGTTATCAATTCTTACAAGCATGTCAGCGACTCTCTTTCAATGCTCCCTAAGCCTGAGAAGAAGGCTTCCCGAGGACACAAGAACCGGCGTTTGTTGTGGTTGTCAAGGAAAAACCATCGCCTCTTGAAAGGCAATGATGGGGTGCTTGTTGTAGCTGCAGATGGAACGGGGAGGTTTAGCACCATCACTGAGGCTATCAACTTTGCTCCAAATAACAGCGTTGGTAGGACAGTAATCTATGTCAAAGAAGGGATTTACGAGGAAAATGTTGAAATCCCAAGCTATAAGACCAATATTGTTTTGCTTGGTGATGGAAAAAATGTCACTTTTATCACTGGCAGCAGAAGTGTCATTGATGGGTGGACCACTTTCAGATCTGCAACTCTAGCGGTCTCTGGAGAGGGTTTTCTTGCACGTGATATTGCTTTTGAGAACAAGGCAGGGCCAGAGAAGCATCAAGCAGTTGCCTTAAGAGTGAATGCAGACTTCACTGCTTTCTACAGGTGTGCCATGTATGGTTACCAAGACACTCTTTATGTTCACTCCTTTAGACAATTCTATAGAGAGTGTGACATTTTTGGGAGCATAGATTACATATTTGGGAATGCCGCAGTGGTTTTACAAGCATGCAACATTGTGTCCAGGATGCCAATGCCAGGCCAATTCACAGTCATCACTGCACAGTCCAGAGATTCCCCTGATGAGGACACTGGCATTTCAATCCAAAACTGCTCGATTCTAGCTACCACAGACTTGTACTACAATTCTGGCAGTGTGAAGAGCTACCTCGGAAGGCCATGGAGGGTTTATTCTCGTACTGTGTACCTTGAGTCCTACATTGATGCATTTATTGACCAAGAGGGGTGGACCAAGTGGTCCAACGATGAAGGCTTGGACACTTTGTATTACGGAGAGTATGCCAATTATGGGCCTGGTTCAGGTACAGATAACAGAGTACAATGGGTTGGCTACCATTTAATGGATTACGACAGTGCCTACAACTTCTCAGCTTCGGAATTTATAATTGCTGATGCTTGGCTTGGGTCTACATCATTCCCTTATGATAATGGGATCTAA 1584 0.4375 MAIASPKLFLLLLTFLFSHTIAVESFNAFTIPTSHANFSSLNRTNLFHEVGFNSSKLSISITINPNIINTLLQSLQAAITDATKLSDLLNNAGHSSIIENKIGAVQDCRELQQSTLASLERSLSGIRSQDSRKVVDARTYLSAALTNKGTCLESLDSASGTLKPVLVNSVINSYKHVSDSLSMLPKPEKKASRGHKNRRLLWLSRKNHRLLKGNDGVLVVAADGTGRFSTITEAINFAPNNSVGRTVIYVKEGIYEENVEIPSYKTNIVLLGDGKNVTFITGSRSVIDGWTTFRSATLAVSGEGFLARDIAFENKAGPEKHQAVALRVNADFTAFYRCAMYGYQDTLYVHSFRQFYRECDIFGSIDYIFGNAAVVLQACNIVSRMPMPGQFTVITAQSRDSPDEDTGISIQNCSILATTDLYYNSGSVKSYLGRPWRVYSRTVYLESYIDAFIDQEGWTKWSNDEGLDTLYYGEYANYGPGSGTDNRVQWVGYHLMDYDSAYNFSASEFIIADAWLGSTSFPYDNGI* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1313 527 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 184 IPR035513 -
Pvu3g1313 527 PANTHER PECTINESTERASE 7 526 - -
Pvu3g1313 527 CDD PMEI-like_3 46 189 - -
Pvu3g1313 527 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Pvu3g1313 527 SUPERFAMILY Pectin lyase-like 216 524 IPR011050 -
Pvu3g1313 527 Gene3D - 215 527 IPR012334 -
Pvu3g1313 527 PANTHER PECTINESTERASE 7 526 - -
Pvu3g1313 527 Pfam Pectinesterase 218 512 IPR000070 GO:0030599|GO:0042545
Pvu3g1313 527 TIGRFAM PME_inhib: pectinesterase inhibitor domain 66 184 IPR006501 GO:0004857
Pvu3g1313 527 SMART PMEI_2 54 183 IPR006501 GO:0004857
Pvu3g1313 527 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 186 IPR035513 -
Pvu3g1313 527 Pfam Plant invertase/pectin methylesterase inhibitor 74 183 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1313 Pvu-Chr3 30860912 30863025 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1313 39 527 Carbohydrate Esterase AT2G26440 64.902 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1313 - K01051 pvu:PHAVU_003G126600g 1039.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1313 3 30860912 30863025 Pvu9g2298 9 32966761 32968442 PCT