Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1312 ATGGCTGTTTCTTCACCCAGATACCGTTCCGCCCTCGCATGCTCCTTCTTCTTTCTTTTCTTTCTCGCACTCTGCACCCCTCTCACCGCCGCCACAGATTTCGCCGGTTCAGCTTGCCTCGGGGTCTCCCCCGCCCACTTCGCCGGCTCACTCACCCAAGTCATCACCGCCATCAAACAACTCACATCCATTCTCTCACGCTTCTCCAAGCCCTTCGCCGACCTCCGCCTCGCCACTGCCGTCGCCGACTGCCTCGACTTGCTCGACCTCTCCTCCGACGTCCTCTCCTGGGCCCTCTCCGCCTCTCAGAACCCCAAAGGGAGGCATAACAGCACGGGGGAGCTGAGTTCCGATTTGAGGACATGGCTGAGTGCGGTACTTGCGCATCCACAAACTTGCATGGACGGATTCGAAGGGACGAACGGCATTGTGAAGAGCTTGGTATCCGCTGGCATCGGCGAAGTGGTGTCGTTGGTGGAGCAGCTTCTTGCGCAGGTGGTGCCCGTAGACGATGAATTTGACGCTAGCAAGGGGCAGATTCCGTCGTGGGTTAAACCCAGGGAAAGGAAGCTTCTGCAATCGAGTGGAGTGAGTCCTGATGCTGTGGTAGCTTTGGATGGGAGTGGAAACTACGGCACAATCATGGATGCGGTGCTTGCGGCGCCCGATTATAGCATGAAACGGTTCGTGATTTACATCAAGAAAGGTGTTTATGTTGAGAACGTGGAGATCAAGAAGAAGAAATGGAACATCATGATGGTTGGAGATGGGATGGACGCCACCGTGATCTCCGGTAACCGGAGTTACATCGACGGTTGGACCACCTTCCGCTCATCCACATTCGCTGTGAGTGGCAGAGGGTTCATAGCAAGAGACATTTCCTTTCAGAACACGGCAGGGCCTGAGAAGCACCAAGCAGTGGCACTGAGATCAGACTCAGACCTCTCAGTGTTCTACCGATGTGGGATTTTGGGCTTCCAAGACAGCCTATACACTCACACCATGCGCCAATTCTTCAGAGAGTGCAGAATAACAGGCACAGTGGACTTCATCTTCGGCGACGCCACTGCCATGTTCCAGAACTGCTTAATACAAGCGAAGAAGGGCTTGCCAAATCAAAAGAACACTATCACAGCACACGGTAGAAAAGACCCAAATGAACCAACAGGTTTCTCATTCCAGTTCTGCAACGTCACTGCAGACTCTGACCTTGCACCCTTGGTCAGCACCACTCAAACGTATCTGGGCAGACCCTGGAAGACCTACTCACGAACCGTTTTCATGCAATCGTTCATGAGTGAGGTGATAAGGTCAGAGGGGTGGTTGGAGTGGAATGGAGACTTTGCTTTGGACACATTGTATTATGCTGAGTACCTGAACACCGGAGCAGGTGCTGGCATAGCTAACCGTGTGAAATGGAGAGGCTACCATGCATTCAATGATTCAAGCCAGGTGAGTAACTTCACAGTGGCTAAGTTTATTGAGGGGAATCTGTGGTTGCCTTCCACTGGAGTAACCTACACTGCTGCATTCACAGTTTAA 1542 0.5279 MAVSSPRYRSALACSFFFLFFLALCTPLTAATDFAGSACLGVSPAHFAGSLTQVITAIKQLTSILSRFSKPFADLRLATAVADCLDLLDLSSDVLSWALSASQNPKGRHNSTGELSSDLRTWLSAVLAHPQTCMDGFEGTNGIVKSLVSAGIGEVVSLVEQLLAQVVPVDDEFDASKGQIPSWVKPRERKLLQSSGVSPDAVVALDGSGNYGTIMDAVLAAPDYSMKRFVIYIKKGVYVENVEIKKKKWNIMMVGDGMDATVISGNRSYIDGWTTFRSSTFAVSGRGFIARDISFQNTAGPEKHQAVALRSDSDLSVFYRCGILGFQDSLYTHTMRQFFRECRITGTVDFIFGDATAMFQNCLIQAKKGLPNQKNTITAHGRKDPNEPTGFSFQFCNVTADSDLAPLVSTTQTYLGRPWKTYSRTVFMQSFMSEVIRSEGWLEWNGDFALDTLYYAEYLNTGAGAGIANRVKWRGYHAFNDSSQVSNFTVAKFIEGNLWLPSTGVTYTAAFTV* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1312 513 Pfam Pectinesterase 200 497 IPR000070 GO:0030599|GO:0042545
Pvu3g1312 513 Pfam Plant invertase/pectin methylesterase inhibitor 56 149 IPR006501 GO:0004857
Pvu3g1312 513 ProSitePatterns Pectinesterase signature 2. 344 353 IPR033131 -
Pvu3g1312 513 PANTHER PECTINESTERASE 175 511 - -
Pvu3g1312 513 PANTHER PECTINESTERASE 43 171 - -
Pvu3g1312 513 CDD PMEI-like_4 28 169 - -
Pvu3g1312 513 ProSitePatterns Pectinesterase signature 1. 225 244 IPR018040 -
Pvu3g1312 513 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 43 171 - -
Pvu3g1312 513 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 175 511 - -
Pvu3g1312 513 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 167 IPR035513 -
Pvu3g1312 513 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 162 IPR035513 -
Pvu3g1312 513 SMART PMEI_2 30 165 IPR006501 GO:0004857
Pvu3g1312 513 Gene3D - 194 511 IPR012334 -
Pvu3g1312 513 SUPERFAMILY Pectin lyase-like 195 508 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1312 Pvu-Chr3 30851467 30855033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1312 16 511 Carbohydrate Esterase AT3G43270 61.598 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1312 K01051 - gmx:100814987 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1312 3 30851467 30855033 Pvu9g2295 9 32938722 32940635 PCT