Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1306 ATGGGGTTCTACGTTGAAGACCCTCTCTCTGGCTTCACAATAGGACAGGCCATATACGAGGCAGCTCTCATCATTGCAGTTCTGAGATGGGTCTTATGCTTCCTCTTCACACTCATCAACGACACAAGAACAAGCTCTGAAGACACCCCACCTCAATCTTGTCCTCAGACCACAAGAGACAGGGACAGCACCCTTGTGCTCACCACCTTCGGGGAGATTAAGGAGAGGCTCCCACACACAGAGGACACGTGTGCGGTTTGCCTCAACCAGCTGGAGGTGGAGGACGAGGTTCGGGAGCTCATGAACTGTTACCACGTGTTCCACAGAGAGTGCATAGACAGATGGTTGGAGCATGAGCACGAGAATCACAACCCCACCTGTCCACTCTGCAGAGCCCCTTTGCTGAGTTCTTGCTGCCACCACAACTCCGCCACTTCTCAGCCTCCTCCTCAGCCTAGTTGGGCTGTGGAGAGACTTCTCTATCTCTTTGGGGATGATTTGCTACCTTGTTAG 513 0.5302 MGFYVEDPLSGFTIGQAIYEAALIIAVLRWVLCFLFTLINDTRTSSEDTPPQSCPQTTRDRDSTLVLTTFGEIKERLPHTEDTCAVCLNQLEVEDEVRELMNCYHVFHRECIDRWLEHEHENHNPTCPLCRAPLLSSCCHHNSATSQPPPQPSWAVERLLYLFGDDLLPC* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1306 170 ProSiteProfiles Zinc finger RING-type profile. 84 131 IPR001841 -
Pvu3g1306 170 Pfam Ring finger domain 82 131 IPR001841 -
Pvu3g1306 170 SMART ring_2 84 130 IPR001841 -
Pvu3g1306 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 169 - -
Pvu3g1306 170 SUPERFAMILY RING/U-box 78 137 - -
Pvu3g1306 170 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 169 - -
Pvu3g1306 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 136 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1306 Pvu-Chr3 30743304 30744181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1306 1 167 C3H Transcription Factor Family AT5G20885 46.111 1.17e-42 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1306 K16281 - gmx:100306203 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1306 3 30743304 30744181 Pvu3g1306 3 30743304 30744181 ECH