Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1305 ATGTCAACAGCAGAACCTCCTCAATTCCAAGAAGCAGCGCGATGCGTTGTCTGCAATTGCGGTTTCAACACCTTCAGAAGAAGGCACCACTGTAGATCCTGTGGGAGAACATTGTGCAGTGAACATTCATCAAATCAAATGGCTTTACCACAATTTGGCATTTACTCAAATGTCCGAGTATGTGCTGATTGTTTCAACAACTCAGGGTCTGGAAAGGATGTACCACAGGGTTCTTCGGGCAGAGCTAACAGTGTGACGGATACAATTTCTAAATTGGATATTAATGCTAATGTTGATTCAAAATCCATAGCAACTGCAGAGAATAATCTTGTATCAGACATTAAAGAGTGTAAGTGTGGAATGCCACTTTGCATCTGTGAAGCTCCCGCCCCTTCCTCTGATGCACCCTCCCAACAGAGGAAACCCAGTCCAGTTATTGCAGCTCCATCAAATCCTAAACCTAAGAAAACAGACACTGCTCCGAAAAATAGAAGCTCCAGTTCAACTAGCAAATTTAGTTCTATGAATGGTACCTCAGACAGACCTCAAAGTGATTATGAAGTTAGTGGAGAGGGTTTAAGAGAAGCAATAAAAAATGGTGACATTGGTGCTGTTAAGAAACTTCTTAATGAGGGTGTGGATGCAAATTACAAGGACAAACAAGGACTGTCTTTATTACATTTGGCTGCAGTCTTCAATCAAACTGATATAGTTTTCACTCTCATGGATTCGGGGGCAAGCCTGGAGCACAAGAATGCACAAGGAGAAACACCTTTAGATTGTGCACCAGCTACATTGCAATACAAAATGCGAAAAAAGATGGAAGAAGGGGGAGCAATGGTCTAA 846 0.4208 MSTAEPPQFQEAARCVVCNCGFNTFRRRHHCRSCGRTLCSEHSSNQMALPQFGIYSNVRVCADCFNNSGSGKDVPQGSSGRANSVTDTISKLDINANVDSKSIATAENNLVSDIKECKCGMPLCICEAPAPSSDAPSQQRKPSPVIAAPSNPKPKKTDTAPKNRSSSSTSKFSSMNGTSDRPQSDYEVSGEGLREAIKNGDIGAVKKLLNEGVDANYKDKQGLSLLHLAAVFNQTDIVFTLMDSGASLEHKNAQGETPLDCAPATLQYKMRKKMEEGGAMV* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1305 281 SUPERFAMILY FYVE/PHD zinc finger 11 68 IPR011011 -
Pvu3g1305 281 MobiDBLite consensus disorder prediction 130 189 - -
Pvu3g1305 281 ProSiteProfiles Ankyrin repeat region circular profile. 221 252 - -
Pvu3g1305 281 MobiDBLite consensus disorder prediction 161 185 - -
Pvu3g1305 281 ProSiteProfiles Ankyrin repeat profile. 221 253 IPR002110 GO:0005515
Pvu3g1305 281 Pfam Ankyrin repeats (3 copies) 195 262 IPR002110 GO:0005515
Pvu3g1305 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 69 IPR013083 -
Pvu3g1305 281 Pfam FYVE zinc finger 10 67 IPR000306 GO:0046872
Pvu3g1305 281 SUPERFAMILY Ankyrin repeat 194 264 IPR036770 -
Pvu3g1305 281 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 3 277 - -
Pvu3g1305 281 SMART fyve_4 1 70 IPR000306 GO:0046872
Pvu3g1305 281 Gene3D - 151 279 IPR036770 -
Pvu3g1305 281 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 9 69 IPR017455 -
Pvu3g1305 281 CDD FYVE_scVPS27p_like 8 65 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1305 200 279 MAP Kinase Kinase Kinase AT3G58760 35.000 1.12e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1305 - - gmx:100814367 485.337