Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1304 ATGGCTGGTGTGAACCCCGTGGGAGCAGAAGGGTGGAAGCTTTATCCTACTTCTGCTATGGAGATTGCCCTTGATAGTGTTGATGGAAGGAGTGAGAACATGGAGGTCCGCAACACATTAACTGATGATGGCTCCACGCATTTCTCTGCTACCAGGCCTGTGGCAGTGCCATCATCTGGACAGATTAAAGCGATTCCTAGTCCAACCACGTTTAGCATCCTCTATAAGGGGAATATGTGTATTTACGAAGGAATTCCCGCAGAAAAGGTGCGTGAAATAATGTTGATTGCTTCTGTCTCTGCTAAGTCTGCTGAAATGAAGAGTGGGGTCCCTTGGGCTTCACACATTTCCAAAAGTCCTTCTCTACTGGGAAACTCTACTAATTGTGCAAAGAAGAGTTCCATTCTAAGGCTGCAAGAGGAATTTCCATTATCACGCAGACAATCACTTCAAAGGTTTCTCGAGAAGCGAAGTAACAGATTGGCTAACAAAGCCCCTTACGCCTCAACGAAAAACATGGCTCACAACATAGAGAACAACTTCTGCTCTGACATGTCACATTTTGGTTCCTTGGACTGTCAGAAGAGCAATTTCAGCCCAGTTTTGTCGCCTCTTTAA 618 0.4547 MAGVNPVGAEGWKLYPTSAMEIALDSVDGRSENMEVRNTLTDDGSTHFSATRPVAVPSSGQIKAIPSPTTFSILYKGNMCIYEGIPAEKVREIMLIASVSAKSAEMKSGVPWASHISKSPSLLGNSTNCAKKSSILRLQEEFPLSRRQSLQRFLEKRSNRLANKAPYASTKNMAHNIENNFCSDMSHFGSLDCQKSNFSPVLSPL* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1304 205 ProSiteProfiles Tify domain profile. 64 99 IPR010399 -
Pvu3g1304 205 Pfam Jas motif 143 167 IPR018467 -
Pvu3g1304 205 Pfam tify domain 66 98 IPR010399 -
Pvu3g1304 205 PANTHER DIVERGENT CCT MOTIF PROTEIN 1 184 - -
Pvu3g1304 205 SMART tify_2 64 99 IPR010399 -
Pvu3g1304 205 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 184 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1304 Pvu-Chr3 30689612 30692651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1304 68 170 Tify Gene Family AT5G20900 34.513 2.42e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pvu3g1304 tify 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1304 K13464 - gmx:100306282 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1304 3 30689612 30692651 Pvu9g2290 9 32854728 32858650 PCT