Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1282 CTTATCTTTGCTGGGAAGCAATTGGAAGATGGGCGTACCCTTGCTGATTATAACATCCAGAAGGAATCCACTCTGCACCTGGTGTTGAGGCTTCGTGGTGGAATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTGGAGGTGGAGAGCTCTGATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGCATCCCACCAGATCAGCAGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAACATTCAGAAGGAATCCACCCTCCACCTTGTCCTTCGCCTTCGCGGTGGCTTCTAA 336 0.4762 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1282 111 Pfam Ubiquitin family 37 108 IPR000626 GO:0005515
Pvu3g1282 111 Pfam Ubiquitin family 1 32 IPR000626 GO:0005515
Pvu3g1282 111 SMART ubq_7 35 106 IPR000626 GO:0005515
Pvu3g1282 111 CDD Ubl_ubiquitin 35 110 - -
Pvu3g1282 111 ProSiteProfiles Ubiquitin domain profile. 35 110 IPR000626 GO:0005515
Pvu3g1282 111 SUPERFAMILY Ubiquitin-like 1 34 IPR029071 -
Pvu3g1282 111 PRINTS Ubiquitin signature 45 65 IPR019956 -
Pvu3g1282 111 PRINTS Ubiquitin signature 66 86 IPR019956 -
Pvu3g1282 111 PRINTS Ubiquitin signature 87 108 IPR019956 -
Pvu3g1282 111 ProSitePatterns Ubiquitin domain signature. 61 86 IPR019954 -
Pvu3g1282 111 SUPERFAMILY Ubiquitin-like 34 110 IPR029071 -
Pvu3g1282 111 PANTHER - 1 110 - -
Pvu3g1282 111 Gene3D - 1 34 - -
Pvu3g1282 111 Gene3D - 35 111 - -
Pvu3g1282 111 ProSiteProfiles Ubiquitin domain profile. 1 34 IPR000626 GO:0005515
Pvu3g1282 111 PANTHER UBIQUITIN 1 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1282 Pvu-Chr3 30314879 30315385 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1282 1 35 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.143 1.65e-18 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1282 - K08770 bvg:104907074 218.394