Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1280 ATGGTGGTCTTCGAAGGCACTTATATAATGGTTCATCGTGGCAGAAAGAGTTACTCTATATATTCTAACCATCGCTCTATTCTTCCATTCATCGCTCTATTCTTCATTTCGCACATCTTTCATCGTTTCATCTCCCCTCTCAAGATGCAGATATTCGTGAAAACTTTGACTGGCAAGACCATAACCCTCGAGGTAGAATCGTCTGACACCATTGATAACGTGAAAGCCAAGATTCAAGACAAGGAGGGTATCCCACCTGACCAGCAGAGACTTATCTTTGCGGGTAAGCAACTCGAGGATGGTCGCACTCTTGCCGATTACAATATCCAAAAGGAATCCACTCTCCACCTCGTGCTTCGCCTCAGGGGTGGCATGCAAATCTTTGTCAAGACCTTGACTGGGAAGACCATTACCCTTGAGGTCGAGAGTTCAGACACCATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCTCCAGACCAGCAGAGGCTGATTTTCGCTGGGAAGCAACTTGAGGACGGAAGAACCCTTGCTGATTACAATATTCAAAAGGAGTCAACCCTCCACTTGGTGCTTCGTTTAAGGGGTGGCATGCAAATCTTTGTCAAGACTTTGACCGGGAAAACCATTACCTTGGAGGTGGAGAGTTCAGACACCATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTATAATATCCAGAAAGAATCTACTCTGCACTTGGTTTTGAGGCTTCGTGGTGGAATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAGGTTGAAAGTTCTGACACCATCGATAATGTGAAGGCAAAGATTCAGGACAAGGAAGGCATACCACCAGATCAACAGAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCTGATTATAACATCCAGAAGGAATCCACTCTGCACCTGGTGTTGAGGCTTCGTGGTGGAATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTGGAGGTGGAGAGCTCTGATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAGCAGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAATATTCAGAAGGAATCCACCCTCCACCTTGTCCTTCGCCTTCGCGGTGGTTTCTAA 1290 0.4597 MVVFEGTYIMVHRGRKSYSIYSNHRSILPFIALFFISHIFHRFISPLKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1280 429 ProSiteProfiles Ubiquitin domain profile. 49 124 IPR000626 GO:0005515
Pvu3g1280 429 ProSitePatterns Ubiquitin domain signature. 151 176 IPR019954 -
Pvu3g1280 429 ProSiteProfiles Ubiquitin domain profile. 201 276 IPR000626 GO:0005515
Pvu3g1280 429 SUPERFAMILY Ubiquitin-like 351 428 IPR029071 -
Pvu3g1280 429 PANTHER UBIQUITIN 13 200 406 - -
Pvu3g1280 429 PANTHER UBIQUITIN 13 47 254 - -
Pvu3g1280 429 PANTHER UBIQUITIN 13 331 428 - -
Pvu3g1280 429 PANTHER UBIQUITIN 13 123 331 - -
Pvu3g1280 429 SUPERFAMILY Ubiquitin-like 200 276 IPR029071 -
Pvu3g1280 429 ProSiteProfiles Ubiquitin domain profile. 125 200 IPR000626 GO:0005515
Pvu3g1280 429 Pfam Ubiquitin family 51 122 IPR000626 GO:0005515
Pvu3g1280 429 Pfam Ubiquitin family 279 350 IPR000626 GO:0005515
Pvu3g1280 429 Pfam Ubiquitin family 355 426 IPR000626 GO:0005515
Pvu3g1280 429 Pfam Ubiquitin family 203 274 IPR000626 GO:0005515
Pvu3g1280 429 Pfam Ubiquitin family 127 198 IPR000626 GO:0005515
Pvu3g1280 429 Gene3D - 125 200 - -
Pvu3g1280 429 Gene3D - 42 124 - -
Pvu3g1280 429 Gene3D - 353 429 - -
Pvu3g1280 429 Gene3D - 201 276 - -
Pvu3g1280 429 Gene3D - 277 352 - -
Pvu3g1280 429 ProSitePatterns Ubiquitin domain signature. 303 328 IPR019954 -
Pvu3g1280 429 CDD Ubl_ubiquitin 125 200 - -
Pvu3g1280 429 ProSitePatterns Ubiquitin domain signature. 75 100 IPR019954 -
Pvu3g1280 429 CDD Ubl_ubiquitin 277 352 - -
Pvu3g1280 429 PRINTS Ubiquitin signature 59 79 IPR019956 -
Pvu3g1280 429 PRINTS Ubiquitin signature 80 100 IPR019956 -
Pvu3g1280 429 PRINTS Ubiquitin signature 101 122 IPR019956 -
Pvu3g1280 429 SUPERFAMILY Ubiquitin-like 124 200 IPR029071 -
Pvu3g1280 429 SUPERFAMILY Ubiquitin-like 37 124 IPR029071 -
Pvu3g1280 429 SUPERFAMILY Ubiquitin-like 276 352 IPR029071 -
Pvu3g1280 429 PANTHER UBIQUITIN 200 406 - -
Pvu3g1280 429 PANTHER UBIQUITIN 331 428 - -
Pvu3g1280 429 PANTHER UBIQUITIN 123 331 - -
Pvu3g1280 429 PANTHER UBIQUITIN 47 254 - -
Pvu3g1280 429 ProSitePatterns Ubiquitin domain signature. 227 252 IPR019954 -
Pvu3g1280 429 CDD Ubl_ubiquitin 49 124 - -
Pvu3g1280 429 ProSitePatterns Ubiquitin domain signature. 379 404 IPR019954 -
Pvu3g1280 429 ProSiteProfiles Ubiquitin domain profile. 353 428 IPR000626 GO:0005515
Pvu3g1280 429 CDD Ubl_ubiquitin 201 276 - -
Pvu3g1280 429 ProSiteProfiles Ubiquitin domain profile. 277 352 IPR000626 GO:0005515
Pvu3g1280 429 CDD Ubl_ubiquitin 353 428 - -
Pvu3g1280 429 SMART ubq_7 125 196 IPR000626 GO:0005515
Pvu3g1280 429 SMART ubq_7 201 272 IPR000626 GO:0005515
Pvu3g1280 429 SMART ubq_7 49 120 IPR000626 GO:0005515
Pvu3g1280 429 SMART ubq_7 353 424 IPR000626 GO:0005515
Pvu3g1280 429 SMART ubq_7 277 348 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1280 Pvu-Chr3 30282016 30285066 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1280 353 429 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 4.99e-47 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1280 - K08770 han:110936586 741.11