Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1279 ATGCAGATATTCGTGAAAACTTTGACTGGCAAGACCATAACCCTCGAGGTAGAATCGTCTGACACCATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCTCCAGATCAGCAGAGGCTGATTTTTGCTGGTAAACAACTTGAGGATGGAAGAACCCTTGCCGATTATAATATTCAGAAGGAGTCCACCCTCCACCTGGTGCTTCGTTTGAGAGGTGGTATGCAGATTTTTGTGAAGACTTTGACTGGAAAGACCATAACCTTGGAGGTGGAGAGTTCAGATACCATTGATAATGTAAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAGAGGCTGATATTTGCTGGTAAACAGCTTGAGGATGGAAGAACCCTTGCCGATTATAATATTCAGATGGAATCCACCCTGCACTTGGTTTTGAGGCTTAGGGGTGGCATGCAAATTTTTGTGAAGACTTTAACTGGAAAGACCATAACCTTGGAGGTGGAGAGTTCAGATACCATTGATAATGTCAAGGCCAAGATTCAAGACAAGGAGGGCATCCCTCCGGATCAGCAGAGGCTTATTTTTGCTGGTAAACAGCTTGAAGACGGTAGAACCCTTGCGGATTATAACATCCAGAAGGAATCCACTCTGCACTTGGTTTTGAGGCTTCGGGGTGGCATGCAAATTTTTGCAAAGATTCAGGACAAGGAAGGCATCCCACCAGACCAGCAGAGGCTCATATTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCGGATTATAACATCCAGAAGGAATCTACTCTGCACTTAGTGTTGAGGCTTCGCGGTGGAATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAGGTGGAGAGCTCTGATACAATTGATAATGTGAAAGCAAAGATTCAAGACAAGGAGGGCATTCCACCAGATCAGCAGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAACATTCAGAAGGAATCCACCCTCCACCTTGTCCTTCGCCTTCGTGGTGGCCTTTGA 1077 0.4633 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQMESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGL* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1279 358 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Pvu3g1279 358 Pfam Ubiquitin family 233 279 IPR000626 GO:0005515
Pvu3g1279 358 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Pvu3g1279 358 Pfam Ubiquitin family 284 355 IPR000626 GO:0005515
Pvu3g1279 358 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Pvu3g1279 358 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Pvu3g1279 358 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Pvu3g1279 358 ProSiteProfiles Ubiquitin domain profile. 234 281 IPR000626 GO:0005515
Pvu3g1279 358 SUPERFAMILY Ubiquitin-like 233 281 IPR029071 -
Pvu3g1279 358 SMART ubq_7 229 277 IPR000626 GO:0005515
Pvu3g1279 358 SMART ubq_7 282 353 IPR000626 GO:0005515
Pvu3g1279 358 SMART ubq_7 153 224 IPR000626 GO:0005515
Pvu3g1279 358 SMART ubq_7 1 72 IPR000626 GO:0005515
Pvu3g1279 358 SMART ubq_7 77 148 IPR000626 GO:0005515
Pvu3g1279 358 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Pvu3g1279 358 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Pvu3g1279 358 PANTHER POLYUBIQUITIN-LIKE 233 358 - -
Pvu3g1279 358 PANTHER POLYUBIQUITIN-LIKE 77 234 - -
Pvu3g1279 358 PANTHER POLYUBIQUITIN-LIKE 1 157 - -
Pvu3g1279 358 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Pvu3g1279 358 CDD Ubl_ubiquitin 77 152 - -
Pvu3g1279 358 CDD Ubl_ubiquitin 1 76 - -
Pvu3g1279 358 CDD Ubl_ubiquitin 153 228 - -
Pvu3g1279 358 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Pvu3g1279 358 ProSiteProfiles Ubiquitin domain profile. 282 357 IPR000626 GO:0005515
Pvu3g1279 358 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Pvu3g1279 358 PANTHER UBIQUITIN 1 157 - -
Pvu3g1279 358 PANTHER UBIQUITIN 77 234 - -
Pvu3g1279 358 PANTHER UBIQUITIN 233 358 - -
Pvu3g1279 358 CDD Ubl_ubiquitin 282 357 - -
Pvu3g1279 358 ProSitePatterns Ubiquitin domain signature. 308 333 IPR019954 -
Pvu3g1279 358 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Pvu3g1279 358 SUPERFAMILY Ubiquitin-like 280 357 IPR029071 -
Pvu3g1279 358 Gene3D - 232 281 - -
Pvu3g1279 358 Gene3D - 77 152 - -
Pvu3g1279 358 Gene3D - 1 76 - -
Pvu3g1279 358 Gene3D - 282 358 - -
Pvu3g1279 358 Gene3D - 153 231 - -
Pvu3g1279 358 SUPERFAMILY Ubiquitin-like 152 228 IPR029071 -
Pvu3g1279 358 PRINTS Ubiquitin signature 11 31 IPR019956 -
Pvu3g1279 358 PRINTS Ubiquitin signature 32 52 IPR019956 -
Pvu3g1279 358 PRINTS Ubiquitin signature 53 74 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1279 Pvu-Chr3 30273458 30275273 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1279 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 7.54e-48 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1279 - K08770 dct:110106991 563.148