Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1276 ATGGATGTGGAGGACTGGGATTTGAGTGCAGAGGACCTCGATTCCCTTGAAAGAGACGCTTTCCAGAAGATTGCTCAACTACGCAACCCTCCTCCTCAATCTTCTCCGCACCAACATTACAATTCTGCAACTACAACAACGAATCATTTCCCACCAAAACCCCTTCCCAATTTGCGTACCCAAACTGTTGGTGCTTCGTCTCAAGGAGCAAGAGCATTGCCCACGTCATTGAAATCAAGGACAAACAACGACGAACATTCCAAGAAAGGACTGATAAAGTTTTCTGTCAAATTTTTTCTTCATTCCAGTGGAAATATTGCAGCAAAGTTTCAATATGACCAGGTAGTAGTAGCTACTTTTCGAAAAATCCCTAATTCTTCTTGGAATGCAAAAGAACGGTTATGGGTATTCCCACTATCTTCTTTGTCAGAAGCAGAGAAGTTTCTTGGAGAAGTATCAGGTTATAATATTCAGGTTGAAAACTTGGATCCCTTAGTGCAACGTGCCATTGCTGCAGCTTCTGCAGTTCCAGATCTTCAAGATCGATACTACAAGATCCCTAGTTATATTGAATCAAAGCTACTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTGCAGCATGGGGGACGTGTTCTCTTAGCAGATGAAATGGGACTAGGCAAAACATTGCAAGCCATTGCTGTAGCTTCATGCATTCAGGAGTCGTGGCCTGTTCTCATAATTGCACCATCTTCATTACGCTTGCAATGGGCTTCTATGATTCAACAATGGTTGAATATTCCTTCATCAGATATACTTATTGTCTTACCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAATATCATATCTTCAAGTGCCAAAAACAGCATTCGTCTGGATGGACTATTCAACATCATCTCATATGATTTAGTGCCAAAGCTACAGAATATGCTTATGAAATGTGACTTTAAGGTTGTGATTGCTGATGAATCACATTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCTGTCATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCCGCTTTATCCCGACCAATTGAACTATTCAAGCAGCTGGAAGCTCTGTATCCTGATGTATATAAGAATGTTCATGACTATGGTAACCGGTATTGCAAGGGTGGATTTTTTGGACTTTATCAAGGTGCAAGTAACCATGAAGAGTTACACAACTTGATGAAGGCAACGGTGCTGATTCGCAGGCTTAAAAATGATGTTCTTACTGAACTTCCTGTAAAGCGCAGACAACAAGTCTTCCTAGACTTGGCTGACAAGGACATGAAGGAAATTAATGCTTTATTTCGAGAGTTGGAGATGGTAAAAACCAAAATTAAGGCTGCTAAATCACAAGAGGAGGCAGAATCACTCAAGTTTACTCAAAAGAATATAATTAACAAGATATATACTGATTCTGCAGAAGCCAAGATTCCATCTGTTCTTGATTATGTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGCCAATGATTGATTCGATACATGACTTCCTTCGTAAGAAAAAAGTGGGTTGCATCCGGATTGATGGAGGTACGCCTGCTGCTTCCAGGCAACAATTGGTCACTGAGTTTCAGGAAAAAGAGTCTATAAAAGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCCAGTACAGTAATCTTTGCAGAATTGTCTTGGACTCCGGGTGACCTAATTCAGGCTGAAGACCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTTGCAAATGACACGGTTGATGACATCATATGGGACGTAGTACAAAGCAAACTGGAAAATTTGGGGCAGATGTTAGACGGTCATGAAAAGGCCTTAGAGGTCTCAGCTAGTCTGCCAGAGAATAGCCCTTCAAAGCAAAAAACTCTGGACCAGTTTATTAGAAGACCTGAAAACATGGATAGCCCTTCAAAGCAGAAAACACTGGACGAGTTTGTTAGAAGATGTGATAACATGGATAGGTTGGAACATGACGCCAACCCCAAACGTTCCCGAAACTGA 2118 0.4117 MDVEDWDLSAEDLDSLERDAFQKIAQLRNPPPQSSPHQHYNSATTTTNHFPPKPLPNLRTQTVGASSQGARALPTSLKSRTNNDEHSKKGLIKFSVKFFLHSSGNIAAKFQYDQVVVATFRKIPNSSWNAKERLWVFPLSSLSEAEKFLGEVSGYNIQVENLDPLVQRAIAAASAVPDLQDRYYKIPSYIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCIQESWPVLIIAPSSLRLQWASMIQQWLNIPSSDILIVLPQSGGSNRGGFNIISSSAKNSIRLDGLFNIISYDLVPKLQNMLMKCDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHDYGNRYCKGGFFGLYQGASNHEELHNLMKATVLIRRLKNDVLTELPVKRRQQVFLDLADKDMKEINALFRELEMVKTKIKAAKSQEEAESLKFTQKNIINKIYTDSAEAKIPSVLDYVGTVIEAGCKFLIFAHHQPMIDSIHDFLRKKKVGCIRIDGGTPAASRQQLVTEFQEKESIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHEKALEVSASLPENSPSKQKTLDQFIRRPENMDSPSKQKTLDEFVRRCDNMDRLEHDANPKRSRN* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1276 705 SMART ultradead3 190 383 IPR014001 -
Pvu3g1276 705 MobiDBLite consensus disorder prediction 648 684 - -
Pvu3g1276 705 MobiDBLite consensus disorder prediction 663 684 - -
Pvu3g1276 705 Gene3D - 166 423 IPR038718 -
Pvu3g1276 705 ProSiteProfiles HARP domain profile. 88 164 IPR010003 -
Pvu3g1276 705 Coils Coil 446 466 - -
Pvu3g1276 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 645 IPR027417 -
Pvu3g1276 705 MobiDBLite consensus disorder prediction 27 80 - -
Pvu3g1276 705 Gene3D - 456 692 IPR027417 -
Pvu3g1276 705 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 685 - -
Pvu3g1276 705 MobiDBLite consensus disorder prediction 26 84 - -
Pvu3g1276 705 CDD SF2_C_SNF 490 614 - -
Pvu3g1276 705 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 494 646 IPR001650 -
Pvu3g1276 705 Pfam Helicase conserved C-terminal domain 504 603 IPR001650 -
Pvu3g1276 705 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 375 IPR014001 -
Pvu3g1276 705 CDD DEXHc_HARP_SMARCAL1 194 417 - -
Pvu3g1276 705 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 4 685 IPR030101 GO:0006281|GO:0031297|GO:0036310
Pvu3g1276 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 417 IPR027417 -
Pvu3g1276 705 Pfam SNF2-related domain 212 472 IPR000330 GO:0005524|GO:0140658
Pvu3g1276 705 SMART helicmild6 520 603 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1276 Pvu-Chr3 30243859 30254661 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1276 474 623 RAD5 or RAD16-like Gene Family AT1G05120 30.519 7.91e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu3g1276 SNF2_N 1e-26 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1276 K14440 - gmx:100778246 1223.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1276 3 30243859 30254661 Pvu3g1276 3 30243859 30254661 ECH
Pvu3g1276 3 30243859 30254661 Pvu2g0901 2 13792906 13820649 PCT