Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1272 ATGACTTCAACTGAAAAGATGGCTGGCATGAAGCAGGATTCCAAGAAAAACAAGCTGAATAATGAAATCAACAAAGCAGTACCCTTTTACAAACTTTTCTCATTTGCAGACTCTCAGGATTGTCTTCTGATGCTTGTTGGGGCAATAAGTGCTGTTGCTAATGGAATGTGTACGCCTTTACTGACTATATTTGCTGGAGATGCCATTGATGCCCTGGGAGGACATGTTGATGATAAACAAGTAGTTCATGAAGTCTCTAAGGTGTCTCTGAAGCTTGCATCCATAGGCACAGTTGCCTTTTTAGCATCATTCTTGCAGGTGTCTTGCTGGGTGATCACTGGGGAGAGACAAGCAGCAAGAATAAGAGGCTTATACCTCAAAGCAATTTTGAGGCAAGATATCAGCTTCTTTGACCAGGAAACCAACAGTGGAGAGGTTGTTGGAAGGATGTCAGGTGACACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGTTAGGAAAGTTCATACAAAATGTGTCAAGTTTTCTAGGAGCCATAGCCTTAGCCTTCACCAAGGGTTGGCTTCTGAGCCTTGTCCTTCTATCTTCTGTTCCTCTTCTTGTCCTCTCCGGTTCCATGATGAGCTTAGCTTTTGCAAAGATGGCATCTCGAGGACAAGAAGCTTATTCTGAAGCAGCAACTGTTGTGGAGCAGACAATTGGATCAATTCGAACTGTTGCGTCATTTACAGGTGAGAAGCAAGCTATAGCTCAATACAATCAATACTTAACTAAATCTTACAGAATTGCAGTGCAAGAGGGCGTGGTTAGTGGTTTTGGCTTGGGTTCAAATCAACTATTTTCGATCTGCACTTTTGCTTTGGCAATATGGTTTGGAGGGAAGATGGTACTAGAGAAAGGTTACACAGGAGGACAAGTCATTGGTGTATTTTGGGCAATAATGTCTGGTTGTTTGCGTCTGGGGCAGGCATCTCCAAGCTTAAAAGCTTTTTCCGCAGGAAAAGCTGCTGCCTTTAAAATGTTTGAAACAATAAAACGGCAGCCAGATATTGATGCTTATGACACAGACGGTCAACAGGTAGATGATATTTCGGGAGATATAGAACTTAGGGAGGTTTGCTTTTGTTATCCTTCAAGGCCAGATGAATTGATATTCAATGGATTTTCCATTTCAATATCAAGTGGCACTACTGCAGCTTTGGTTGGGAAAAGTGGAAGTGGGAAATCAACAGTTATTAGTTTGATTGAGAGATTTTATGATCCACTAGCCGGTGAAGTTCTCATTGACGGCATCAACCTCAGAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCAGTCCTTTTTACTGGTAGCATTAAAGAAAATATTGGCTATGGTAAGGATTGGGCAACAGATGAAGAAGTCAGAGCTGCAGCTGAACTTGCTAATGCTATTAACTTCATAGATGAATTTCCACATGGGCTTGACACAATGGTCGGTGAGCATGGAACTCAGCTCTCTGGAGGTCAAAAACAAAAAATATCTATAGCAAGAGCAATTCTGAAAGATCCAAGAATTCTTCTCCTTGATGAAGCCACAAGTGCTCTTGATGTAGAATCAGAGAGAGTGGTGCAAGAGACACTAGACAGAGTTATGATCAACCGAACAACTGTCATTGTAGCCCATCGCTTATGCACAATCAGGAATGCTGATATGATTGCAGTTATTCATCAAGGACAACTACAAGAAAAAGGTTCATATGCTGAACTTACTAAAGATCCTGATGGAGCTTTTAGCCAGCTCATTAAACTGCAAGAAATTAGAAGGGACTCAAAACAGCATGATGCAAAGGACACAGGCCAGCAAGAAAACTTCATCGATTATTTCCCTCTATCTTTAAGCCCAGGATCATCTGGAAGAGGAAATAACAGTCAGCAGTCGTTCAGAATGTCAAATGCCATGCCTATCACACTAGGTCTCTTTGAAACATCAGAAGAAGGGCCTGAAGTTCTTCCTTCAGCAGCTTTGCATAAGCCTCAAGAAGTTTCATTTGTCCGCATTGCTTATCTTAACAAACCTGAAATCCCAGTGTTACTCATGGGGACTCTAGCAGCAGCAGCAACTGGCGCAGTACAACCCACGATAGGGCTTCTTATTTCCCACATGATAAATACGTTCTTTGAGCCGGCAGATGAACTCCGTAAAGACTCAAAGTTTTGGTCATTAATATTTGTTGCCATTAGTGTGGGTGCCTTCATATTTATTCCATTAAGGTCCTACTTCTTTGGTGTAGCTGGTTCTAAGTTGATAAAAAGGATCCGGTTAATGTGTTTTGAGAAAATAATTCACATGGAAATAGGCTGGTTTGATAAAGCTGAAAATTCAAGTGGAGTACTTGGAGCAAGGCTTTCAACTGATGCAGCTTCCATTCGAACTTTGGTTGGGGATGCTCTTGGTTTGTTGGTTCAAGATATCGCCACAGCATTCACAGCCTTGGTAATTGCCTTTGAGGCAAACTGGCAGCTTTCTCTAATCTTTCTAGTTTTGGTACCTCTAGTATTACTAAATGGATATGTACAAATGAAGTCAGTGCAAGGTTTCAGCACAGATGCAAAGAAACTATATGAGGAAGCAAGTCAAGTAGCAAATGATGCAGTAGGGAATATGAGAACAGTTGCCGCTTTCTGTGCTGAAGAGAAGGTGATGGCGTTATACCAGAAGAAATGTTTAGGACCAATCCAGACAAGTATAAGGCTAGGTTTAATCTGCGGAGCAGGCTTTGGTTTATCAATCTTCTTTGTGTACGCTGTTAATGCATGCGGTTTTTATGTTGGGGCAAGACTAATTGAGAATGGCAAAGCATCATTCTCAGATTTTTTCCGTGTATTTTATGTTATCATAATGGCAGCCATAGCAATGTCACAATCTGGCTTCGTGACCCCAGCTGCCAGTAAAGCGAAATGTTCTGTTGCTTCTATATTTGCTATTCTTGATCAGAAATCAAGAATAGATCCCGGTGATGAATCTAGAATGACATTACAAGAAGTGAAGGGAGAGATTGAGTTCCACCATGTCACTTTCAAGTATCCAACCAGGACTAATGTTTTTGTATTCAAGGATCTTTCCTTGACTATTCATGCAGGAGAGACAGTTGCTCTAGTAGGTAAAAGTGGAAGTGGAAAGTCAACAATACTCTCATTGCTACAAAGATTTTATGACCCAGATTCAGGCCAGATTACTCTGGATGGAACAGAAGTCCACAAGCTACAACTTAAATGGTTTAGGCAGCAGATGGGGCTGGTGAACCAGGAGCCTGTGTTGTTTAATGACACCATTCGAGCCAATATTGCATACGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTATAGCTGCAGCAGAACTGGCAAATGCACACAAGTTCATTAGCAGTTTGCAGCAGGGATATGATACATTAGTGGGGGTGAGAGGGATTCAACTATCCGGAGGACAGAAGCAAAGGGTGGCCATTGCAAGATCCATAGTAAAGAGTCCAAAAATATTACTGCTAGATGAAGCCACCAGTGCACTTGATGCTGAGTCTGAAAGAATGGTTCAGGATGCACTTGACAGAGTGAGAGTGGATAGAACCACAATTGTGGTGGCTCACAGGCTATCCACCATAAAGGATGCAGATTCAATTGCAGTGGTTGAACATGGAGTGATTGCAGAGAAAGGAAAGCATGACACTTTACTTAACAAAGGTGGTACATATGCTTCCTTAGTAGCACTGCATTCTTCATAA 3783 0.4174 MTSTEKMAGMKQDSKKNKLNNEINKAVPFYKLFSFADSQDCLLMLVGAISAVANGMCTPLLTIFAGDAIDALGGHVDDKQVVHEVSKVSLKLASIGTVAFLASFLQVSCWVITGERQAARIRGLYLKAILRQDISFFDQETNSGEVVGRMSGDTVLIQEAMGEKLGKFIQNVSSFLGAIALAFTKGWLLSLVLLSSVPLLVLSGSMMSLAFAKMASRGQEAYSEAATVVEQTIGSIRTVASFTGEKQAIAQYNQYLTKSYRIAVQEGVVSGFGLGSNQLFSICTFALAIWFGGKMVLEKGYTGGQVIGVFWAIMSGCLRLGQASPSLKAFSAGKAAAFKMFETIKRQPDIDAYDTDGQQVDDISGDIELREVCFCYPSRPDELIFNGFSISISSGTTAALVGKSGSGKSTVISLIERFYDPLAGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFTGSIKENIGYGKDWATDEEVRAAAELANAINFIDEFPHGLDTMVGEHGTQLSGGQKQKISIARAILKDPRILLLDEATSALDVESERVVQETLDRVMINRTTVIVAHRLCTIRNADMIAVIHQGQLQEKGSYAELTKDPDGAFSQLIKLQEIRRDSKQHDAKDTGQQENFIDYFPLSLSPGSSGRGNNSQQSFRMSNAMPITLGLFETSEEGPEVLPSAALHKPQEVSFVRIAYLNKPEIPVLLMGTLAAAATGAVQPTIGLLISHMINTFFEPADELRKDSKFWSLIFVAISVGAFIFIPLRSYFFGVAGSKLIKRIRLMCFEKIIHMEIGWFDKAENSSGVLGARLSTDAASIRTLVGDALGLLVQDIATAFTALVIAFEANWQLSLIFLVLVPLVLLNGYVQMKSVQGFSTDAKKLYEEASQVANDAVGNMRTVAAFCAEEKVMALYQKKCLGPIQTSIRLGLICGAGFGLSIFFVYAVNACGFYVGARLIENGKASFSDFFRVFYVIIMAAIAMSQSGFVTPAASKAKCSVASIFAILDQKSRIDPGDESRMTLQEVKGEIEFHHVTFKYPTRTNVFVFKDLSLTIHAGETVALVGKSGSGKSTILSLLQRFYDPDSGQITLDGTEVHKLQLKWFRQQMGLVNQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTLVGVRGIQLSGGQKQRVAIARSIVKSPKILLLDEATSALDAESERMVQDALDRVRVDRTTIVVAHRLSTIKDADSIAVVEHGVIAEKGKHDTLLNKGGTYASLVALHSS* 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1272 1260 Gene3D - 365 618 IPR027417 -
Pvu3g1272 1260 ProSitePatterns ABC transporters family signature. 506 520 IPR017871 GO:0005524
Pvu3g1272 1260 PANTHER - 12 1258 - -
Pvu3g1272 1260 Gene3D - 1010 1257 IPR027417 -
Pvu3g1272 1260 SUPERFAMILY ABC transporter transmembrane region 687 1004 IPR036640 GO:0005524|GO:0016021
Pvu3g1272 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1009 1256 IPR027417 -
Pvu3g1272 1260 Gene3D ABC transporter type 1, transmembrane domain 919 1009 IPR036640 GO:0005524|GO:0016021
Pvu3g1272 1260 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 45 332 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu3g1272 1260 SUPERFAMILY ABC transporter transmembrane region 31 351 IPR036640 GO:0005524|GO:0016021
Pvu3g1272 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 605 IPR027417 -
Pvu3g1272 1260 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 12 1258 - -
Pvu3g1272 1260 CDD ABC_MTABC3_MDL1_MDL2 367 605 - -
Pvu3g1272 1260 ProSitePatterns ABC transporters family signature. 1160 1174 IPR017871 GO:0005524
Pvu3g1272 1260 Gene3D ABC transporter type 1, transmembrane domain 91 918 IPR036640 GO:0005524|GO:0016021
Pvu3g1272 1260 SMART AAA_5 394 566 IPR003593 -
Pvu3g1272 1260 SMART AAA_5 1047 1240 IPR003593 -
Pvu3g1272 1260 CDD ABC_6TM_Pgp_ABCB1_D2_like 688 1003 - -
Pvu3g1272 1260 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 699 985 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu3g1272 1260 Pfam ABC transporter 1039 1188 IPR003439 GO:0005524
Pvu3g1272 1260 Pfam ABC transporter 386 534 IPR003439 GO:0005524
Pvu3g1272 1260 Pfam ABC transporter transmembrane region 45 316 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu3g1272 1260 Pfam ABC transporter transmembrane region 698 970 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu3g1272 1260 CDD ABC_6TM_Pgp_ABCB1_D1_like 44 340 - -
Pvu3g1272 1260 CDD ABC_MTABC3_MDL1_MDL2 1020 1255 - -
Pvu3g1272 1260 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1020 1257 IPR003439 GO:0005524
Pvu3g1272 1260 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 367 603 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1272 Pvu-Chr3 30197637 30203370 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1272 25 1258 Calmodulin-binding Proteins AT2G36910 41.961 0.0 982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1272 K05658 - gmx:100777713 1938.31