Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1271 ATGGTGACTGAGGCCAGCTTGGATGCACACAAGACTTCACCTGAGATGACAGGATCAACAACTGCTCATCCACCAGTTCAAGGTCCTGAAAATACCCAAGAAACAGATGCCAGGAAGCAGGATTCCAACAAGAGCAAGGTGAAGAATGAAAGCAATAAAACAGTACCCTTTTACAAACTTTTCTCATTTGCAGACTATTGGGATTGTCTTCTGATGCTTGTTGGGGCATTAAGTGCTGTTGCTAATGGAATCGTTATGCCTTTAATGACTATACTTATTGGAGATGCTATTGATGCTTTCGGAGGAAATGCTGATAATAAACAAACAGTAGTTCATGAAGTATCCAAGGCATCTCTGAAGTTTGCATCCATAGGCGCAGGTGCATATTTTGCAGCATTCTTCCAGGTGTCTTGCTGGGTGATCACTGGGGAGAGACAAGCAGCAAGAATAAGAGGCTTATACCTCAAAGCAATTTTGAGGCAAGATATCAGCTTCTTTGACCAGGAAACCAACAGTGGAGAGGTTGTTGGAAGGATGTCAGGTGACACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATCCAGGATGTGGCATGTTTTTTTGGAGGTATAGTCGTAGCATTCATCAAGGGTTGGCTTCTAAGCCTTGTGCTTCTATCTTCTCTTCCTCTTCTTGTCCTCTCTGGTTCCATAATGAGCTTTGCTTTTGCAAAGATGGCATCCCGAGGACAAGCCGCTTATTCAGAAGCAGCAACTCTAGTGGAGCGGACAATTGGCTCAATTCGAACTGTTGCATCATTTACTGGCGAGAAGCAAGCTATAGCTCAATATAATCAATACTTAACAAAAGCTTACAGAGTAGGAGTGCAAGAGGGTTTGACTGGTGGGTTTGGATTTGGTTTTGTTCGATTATTTATCTACTGTACCTATGGTTTGACAATTTGGTTTGGAGGGAAGATGGTTATAGAGAAAGGTTATACGGGAGGACAAGTCATTAGTGTATTTTTTGCAGTTTTGACTGGCTCCATGTCTCTGGGACAGACATCTCCAAGCTTAGCTGCATTTGCTGCAGGACAAGCAGCTGCCTTTAAAATGTTTGAAACAATAAAGAGGCAGCCAGATATTGATGCTTATGACTCTTCTGGTAAACAACTAGATGACATATCAGGAGATATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTTCAAGACCTGATGAACAGATATTCAATAGATTTTCAATTTCAATATCAAGTGGCACTACTGCCGCTTTGGTGGGGCAAAGTGGTAGTGGGAAATCAACAGTTATTAGTTTAATTGAGAGATTTTATGATCCACAAGCTGGTGAAGTTCTCATTGATGGTATCAATGTCAGAGAATTTCAATTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCAGCTCTCTTTACTTGCAGCATTAAAGAGAATATTGGCTATGGAAAGGAGTGGGCAACAGATGAAGAAATAAGAGCAGCAGCTGAACTTGCAAATGCTTCTAATTTCATAGATAAATTTCCCCATGGATTTGACACAATGGTTGGGGAGCATGGAACTCAACTCTCTGGAGGTCAAAAACAAAGAATATCTATAGCAAGAGCAATTCTGAAGGACCCAAGAATTCTGCTCCTTGATGAAGCTACAAGTGCTCTAGATGCAGAATCAGAGAGAGTGGTGCAAGAGACACTAGACAGAATTATGATCAACCGAACAACTGTTATTGTAGCCCACCGCCTAAGCACAATAAGGAATGCTGATGTGATTGCAGTTATTCACGAAGGAAAAGTCGTAGAAAAAGGTACACATGCTGAGCTCACTAAAGATCCTGATGGAGCTTTTAGCCAGCTCGTTAGATTGCAAGAAATTAAAAGGGAGTCAGAACAGCATGATGAAAATTACTTAAACGGGGCAGAAAACATGGTAGATTCTGAACGACAACCGAGCCAACGGTATTCTTTCCCTCAATCTTTAAGCCGGGGATCATCTGGAAGAGGAAACAGCGGTCAGTACTCATTCAGAATATCAAATGCCATACCAACCACACAAGATCTCTTTGAAACATCAGAAGGAGGGTCTGGAGCTTTTCCTTCAGCAGCATCACATAAACCTCAAGAAGTTTCACTTCTCCGCATTGCTTATCTTAACAAGCCTGAAATCCCATTGTTACTCGTGGGGACTCTAGCAGCAGCAGTAACAGGGGCAATACTACCCACCGTGGGGCTCCTTCTTTCCCACATGATAAATACTTTCTATGAGCCTGCAGATGAACTCCGGAAAGACTCAAAATTTTGGGCACTAATATTTGTTGCACTTAGTGTGGGTGCCTTCATATTTCTTCCATTAAGGTCCTACTTTTTTTCTGTAGCTGGTTGTAAGTTAATAAAAAGGATCCGGCTAATGTGTTTTGAGAAAATACTTCACATGGAAATAGGCTGGTTTGATAAAGCCGAAAATTCAAGTGGAGCACTTGGAGCAAGGCTGTCAACTGATGCAGCTTCTATTCGAACTTTGGTTGGGGATGCTCTTGGTTTGCTGGTTCAAGATATTGCTACAGTAGTTACAGCCCTGGCAATTGCCTTTGACACAAACTGGCAGCTTTCTCTCATAGTTCTTGTTTTGGTACCTCTAGTAGTTCTAAATGGACATCTGCAAATGAAGTCCATGCAAGGATTCAGCACAGATGCAAAGAAACTATATGAGGAAGCAAGCCAAGTAGCGAATGATGCAGTAGGGAATATCAGAACAGTTGCCGCTTTCTGTGCTGAAGAGAAGGTGATGAAATTATACCAGAAAAAATGTGCAGGACCCATCCAGACAGGTATAAGGCAAGGTTTAGTCAGCGGAACGGGTTTTGGCTTATCACTGTTCTTTCTGTTCTCTGTTTATGCATGCAGTTTTTATGCTGGGGCCAGACTTGTCGAGAAGGGCAAAACATCAATCTCAGACGTTTTCCGTGTATTTTTTGCTCTCTCGATGGCAGCTATAGCAATGTCACAGTCCGCCTTCATGACCCCAGCTGCAAATAAAGCAAAAAGTTCTGCTGCTTCTGTATTTGCTATCCTTGATCAGAAATCAAGAATAGATACCAATGATGAGTCGGGAATGACATTGCAACAAGTGAAGGGAGATATCGAGTTCCACCATGTCACTTTCAAGTATCCTACCAGGCCTCATGTTCCCGTACTCAGAGATCTTTCCTTGACTATTCACGCAGGAAAGACAGTTGCTCTAGTAGGTGAAAGTGGAAGTGGAAAGTCAACAGTGATCTCATTGTTACAAAGATTTTATGACCCAGATTTGGGTCAGATTACACTGGATGGAACAGAAATCCAAAAGCTAAAACTTAAATGGTTTAGGCAGCAGATGGGTCTGGTAAGCCAGGAGCCTGTGTTGTTTAATGATACCATTCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTATAGCTGCAGCAGAACTGGCAAATGCACACAAGTTCATTAGCAGTTTGCAGCAGGGCTATGATACATTAGTGGGGGAGAGAGGGATTCAACTATCTGGAGGGCAGAAGCAGCGGGTGGCAATTGCGAGAGCCATAGTGAAGAGTCCAAAAATACTACTACTAGATGAAGCCACCAGTGCACTTGATGCTGAGTCTGAAAGAGTGGTTCAGGATGCACTTGATCGAGTGAGGGTAGATAGAACCACAATTGTTGTTGCTCACAGGTTATCCACCATAAAGGATGCAGATTTAATTGCAGTGGTTAAAAATGGAGTCATTGCAGAGAAGGGAAAGCACGACACCTTGCTTAACAAAGGTGGTGCATATCATTCGTTGGTGGCACTGCATAGCAGTGCTGCTTCATCATAG 3909 0.4252 MVTEASLDAHKTSPEMTGSTTAHPPVQGPENTQETDARKQDSNKSKVKNESNKTVPFYKLFSFADYWDCLLMLVGALSAVANGIVMPLMTILIGDAIDAFGGNADNKQTVVHEVSKASLKFASIGAGAYFAAFFQVSCWVITGERQAARIRGLYLKAILRQDISFFDQETNSGEVVGRMSGDTVLIQEAMGEKVGKFIQDVACFFGGIVVAFIKGWLLSLVLLSSLPLLVLSGSIMSFAFAKMASRGQAAYSEAATLVERTIGSIRTVASFTGEKQAIAQYNQYLTKAYRVGVQEGLTGGFGFGFVRLFIYCTYGLTIWFGGKMVIEKGYTGGQVISVFFAVLTGSMSLGQTSPSLAAFAAGQAAAFKMFETIKRQPDIDAYDSSGKQLDDISGDIELREVCFSYPSRPDEQIFNRFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINVREFQLKWIRQKIGLVSQEPALFTCSIKENIGYGKEWATDEEIRAAAELANASNFIDKFPHGFDTMVGEHGTQLSGGQKQRISIARAILKDPRILLLDEATSALDAESERVVQETLDRIMINRTTVIVAHRLSTIRNADVIAVIHEGKVVEKGTHAELTKDPDGAFSQLVRLQEIKRESEQHDENYLNGAENMVDSERQPSQRYSFPQSLSRGSSGRGNSGQYSFRISNAIPTTQDLFETSEGGSGAFPSAASHKPQEVSLLRIAYLNKPEIPLLLVGTLAAAVTGAILPTVGLLLSHMINTFYEPADELRKDSKFWALIFVALSVGAFIFLPLRSYFFSVAGCKLIKRIRLMCFEKILHMEIGWFDKAENSSGALGARLSTDAASIRTLVGDALGLLVQDIATVVTALAIAFDTNWQLSLIVLVLVPLVVLNGHLQMKSMQGFSTDAKKLYEEASQVANDAVGNIRTVAAFCAEEKVMKLYQKKCAGPIQTGIRQGLVSGTGFGLSLFFLFSVYACSFYAGARLVEKGKTSISDVFRVFFALSMAAIAMSQSAFMTPAANKAKSSAASVFAILDQKSRIDTNDESGMTLQQVKGDIEFHHVTFKYPTRPHVPVLRDLSLTIHAGKTVALVGESGSGKSTVISLLQRFYDPDLGQITLDGTEIQKLKLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTLVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVRVDRTTIVVAHRLSTIKDADLIAVVKNGVIAEKGKHDTLLNKGGAYHSLVALHSSAASS* 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1271 1302 MobiDBLite consensus disorder prediction 653 680 - -
Pvu3g1271 1302 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 634 IPR027417 -
Pvu3g1271 1302 SUPERFAMILY ABC transporter transmembrane region 59 380 IPR036640 GO:0005524|GO:0016021
Pvu3g1271 1302 CDD ABC_6TM_Pgp_ABCB1_D2_like 726 1041 - -
Pvu3g1271 1302 ProSitePatterns ABC transporters family signature. 1198 1212 IPR017871 GO:0005524
Pvu3g1271 1302 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 36 1298 - -
Pvu3g1271 1302 MobiDBLite consensus disorder prediction 1 48 - -
Pvu3g1271 1302 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 396 632 IPR003439 GO:0005524
Pvu3g1271 1302 CDD ABC_MTABC3_MDL1_MDL2 1058 1293 - -
Pvu3g1271 1302 PANTHER - 36 1298 - -
Pvu3g1271 1302 SMART AAA_5 1085 1278 IPR003593 -
Pvu3g1271 1302 SMART AAA_5 423 595 IPR003593 -
Pvu3g1271 1302 MobiDBLite consensus disorder prediction 34 48 - -
Pvu3g1271 1302 Gene3D - 1048 1301 IPR027417 -
Pvu3g1271 1302 Gene3D ABC transporter type 1, transmembrane domain 120 1013 IPR036640 GO:0005524|GO:0016021
Pvu3g1271 1302 MobiDBLite consensus disorder prediction 10 33 - -
Pvu3g1271 1302 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1047 1294 IPR027417 -
Pvu3g1271 1302 Pfam ABC transporter 415 563 IPR003439 GO:0005524
Pvu3g1271 1302 Pfam ABC transporter 1076 1226 IPR003439 GO:0005524
Pvu3g1271 1302 Gene3D - 394 647 IPR027417 -
Pvu3g1271 1302 SUPERFAMILY ABC transporter transmembrane region 725 1038 IPR036640 GO:0005524|GO:0016021
Pvu3g1271 1302 Pfam ABC transporter transmembrane region 73 347 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu3g1271 1302 Pfam ABC transporter transmembrane region 736 1006 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu3g1271 1302 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 73 361 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu3g1271 1302 ProSitePatterns ABC transporters family signature. 535 549 IPR017871 GO:0005524
Pvu3g1271 1302 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1058 1295 IPR003439 GO:0005524
Pvu3g1271 1302 CDD ABC_6TM_Pgp_ABCB1_D1_like 72 356 - -
Pvu3g1271 1302 CDD ABC_MTABC3_MDL1_MDL2 396 634 - -
Pvu3g1271 1302 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 737 1023 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1271 Pvu-Chr3 30182713 30189120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1271 53 1296 Calmodulin-binding Proteins AT2G36910 43.735 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1271 K05658 - gmx:100777713 2123.21