Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1269 ATGGAAGGGGATACCAGTTTGAACGGGGTTACCAACAACAATCAGGAATCAAAGTCGAGGGAGTCCAAAGATGAACCCACCAAATCAGTACCATTATACAAGCTTTTCTCCTTTGCTGATTCTTTGGATTACTTGTTGATGTTGGTGGGCACTGTGGGTGCTATTGGGAATGGAGTCTCCATGCCCTTGATGACTTTGATATTTGGAGACATGATCGATGCATTTGGAGGAACCAGTAGTAACACAGACGATGTTGTTGATGAAGTTTCCAAGGTGTCTCTGAAATTTGTATACTTGGCTGTGGGTACCTTCGCTGCATCACTTTTGCAGTTGGCATGCTGGATGATCACTGGAGAGAGACAAGCTGCAAGAATTAGAGGCTTATACCTTCAAACAATTCTGAGGCAAGATGTGACCTTCTTTGATCAAGAGACTAGTACTGGAGAGGTTATTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGCCAGTTTATTCAGTTAATGGCAACTTTCATTGGAGGGTTTGTTATATCATTCATCAAGGGATGGCTTCTAACTGTTGTCATGCTATCTTGTATTCCACTTCTTGTCTTGGCCGGGGCTATGATGAGCCTGGTTATTACAAGAGCGTCATCCAAGGGACAAGCTGCTTATTCCACAGCTTCAAGTGTTGTAGAGCAGACAATTGGTTCTATCCGAACTGTTGCATCATTCACTGGGGAGAGGCTAGCAATAGATAAATACAATCAGTCCTTAATCAAGGCTTACATGAATGGAGTGCAGGAGGCACTAGCTTCTGGTTTCGGTTTTGGTGCGCTATACTTTGTCATTATCTGCAGTTATGGTTTGGCTATTTGGTTTGGCGCTAAAATGATAATCGAGAAAGGATACAATGGAGGAGAGGTTGTGACTGTAATATTTGCTGTATTGACTGGCTCCATGTCTCTTGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTTCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGGAAGCCAGAAATTGATGCATATGACACTAATGGTCGGAGGCTTGAAGACATTCGTGGCGATATAGAGCTTAGGGAAGTTTGCTTTAGTTATCCTACAAGATCTGATGAACTGATATTCAATGGATTTTCCCTTTCAATACCAAGTGGCACTACTGCAGCTTTGGTGGGACAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACAGTCTGGTGCAGTACTTATTGATGGTATCAATCTCAAAGAATTTCAACTGAAATGGATTAGACAGAAAATTGGCTTAGTCAGCCAGGAACCAGTTCTCTTTACTTGTAGCATTAAAGAGAATATTGCCTACGGCAAGGATGGAGCAACTGATGAAGAAATCAGAGCTGCGGTAGAACTTGCTAATGCTGCCAAATTTATAGATAAACTACCTCAGGGACTAGATACAATGGTTGGTGAGCATGGAACTCAGCTCTCTGGGGGTCAAAAGCAGAGAGTGGCAATAGCAAGAGCAATTTTGAAAGACCCAAGAATCCTACTTCTGGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAGAATTGTACAAGAGGCATTGGACAGAATAATGATAAACAGAACAACTGTCATTGTTGCCCACCGCTTGAGTACTATAAGGAATGCCGATACCATTGCTGTTATTCATCAAGGAAAAATAGTTGAAAGAGGTTCACACGATGAACTCACCAAGGATCCCGAAGGAGCCTATAGCCAGCTCATCAGACTACAAGAAATTAAGAAGTCAGAACAGAACGCAGAAGACAGAGAAAAACAAGAGAGTATATCGCTTTCGGGAAGGCATTCAAGTAAAAGGTCTTCTTTCTTACGATCTATAAGCCAAGAGTCACTGGGAGTTGGAAACAGTGGTCGTCATTCATTCTCAGCATCATTTGGCGTGCCCACATCTGTTGGGTTTATAGAACCCGTTGGTGAAGGGCCTGAAGACCATCCTACACCATCTCCTTCACCACCAGAAGTGCCTTTCCGTCGCCTGGCTTACCTGAACAAGCCAGAGTTTCCAGTGTTATTCATGGGGACTGTAGCTGCAATGCTAGCTGGAGCAATATTACCTGTTTTTGGACTATTACTCTCCAAAATGATAAGTATTTTCTATGAGACAGATCATGATGAACTTCGTAAAGATTCAAAAGTTTGGGCATTAGTATTTGTTGCTATTGGTGTGGTGTCACTCCTGGTTTATCCGGCTAGATTCTACTTTTTTGGTGTTGCTGGTGGCAAGTTGATCCAAAGGGTCCGGAAAGCATGTTTTGAGAAAGTAGTTCACATGGAGGTAAGCTGGTTTGATGAAGCAGAGAATTCCAGTGGAGCAATTGGAGCAAGGCTCTCTACTGATGCAGCTTCCATTAGAGCTTTGGTTGGGGATGCACTTGGTTTGCTAGTTCAAAATATTGCCTCAGCAATAACTGGATTGGTAATTGCCTTTGAATCAAGCTGGCAGCTTGCTCTTATAATCCTTGTTATGGTGCCTCTACTTGGACTAAACGGATTTCTGCAAGTCAAGTTCTTGAAAGGATTCAGTGCAGATGCAAAGAAATTGTACGAGGAAGCAAGTCAAGTGGCGAATGATGCTGTGGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGATAAGGTGATGGAGTTATACCGAGGAAAATGCGAAGGACCAATTAAGACGGGCATAAGGAAAGGGATAATAAGTGGAATTAGTTTTGGTATATCATTCTTTGTGCTGTACGCAGTTTACGCAACAAGTTTTTATGCCGGAGCTCGACTGGTAGAGGACGGCAAAACATCATTCTCAAATGTTTTCCGGGTCTTTTTTGCTCTCAGTATGGCGGCTATAGGAATCTCTCAATCTGGCTCTTTGGCCCCTGATTCAGCCAAAGCAAAAAGTGCTGCTGCTTCCATATTTTCCATTATTGACCGAAAATCACAAATAGACCCAAGTGATGACTCTGGAATAACATCGGAAGAAGTGAAGGGAGAGATTGAGCTTAAGCATGTGAGTTTCAAGTATCCTACAAGACCCGATGTTCAAATATTCAGAGATCTTAGCTTGACCATTCGTAGCGGCAAGACAGTTGCGCTGGTTGGAGAAAGTGGAAGTGGAAAATCAACTGTGATCTCATTGTTACAAAGATTTTATGATCCAGACTCCGGTCACATTACACTGGATGGAAAAGAAATTCAAAGCATTCAAGTTAAATGGCTAAGACAGCAGATGGGCCTAGTGAGCCAAGAGCCGGTGCTGTTTAATGACACCATCCGAGCCAATATTGCATATGGAAAAGGAGACGCAACTGAGGCTGAAATTATAGCTGCAGCAGAATTGGCAAACGCGCATAAGTTCATAAGTAGTTTGCAGAAGGGTTATGACACGGTGGTAGGGGAGCGAGGAGTTCAATTATCTGGGGGGCAGAAGCAGCGGGTGGCAATAGCACGAGCTATAGTAAAGAATCCAAAAATATTACTACTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAGAAAGTGGTTCAGGATGCACTTGACCGTGTTATGGTGGACCGAACCACAATAGTAGTGGCTCATAGGTTATCCACTATTAAGGGTGCTGACGTAATTGCTGTAGTTAAGAATGGGGTGATAGCAGAGAAGGGAAAGCATGAAGTATTACTCAGGAAGGGAGGTGACTACGCTTCTTTAGTTGCATTGCACACAAATGCTTCTACATCTTAG 3825 0.4306 MEGDTSLNGVTNNNQESKSRESKDEPTKSVPLYKLFSFADSLDYLLMLVGTVGAIGNGVSMPLMTLIFGDMIDAFGGTSSNTDDVVDEVSKVSLKFVYLAVGTFAASLLQLACWMITGERQAARIRGLYLQTILRQDVTFFDQETSTGEVIGRMSGDTVLIQDAMGEKVGQFIQLMATFIGGFVISFIKGWLLTVVMLSCIPLLVLAGAMMSLVITRASSKGQAAYSTASSVVEQTIGSIRTVASFTGERLAIDKYNQSLIKAYMNGVQEALASGFGFGALYFVIICSYGLAIWFGAKMIIEKGYNGGEVVTVIFAVLTGSMSLGQASPSLSAFASGQAAAFKMFETIKRKPEIDAYDTNGRRLEDIRGDIELREVCFSYPTRSDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQSGAVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAVELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVERGSHDELTKDPEGAYSQLIRLQEIKKSEQNAEDREKQESISLSGRHSSKRSSFLRSISQESLGVGNSGRHSFSASFGVPTSVGFIEPVGEGPEDHPTPSPSPPEVPFRRLAYLNKPEFPVLFMGTVAAMLAGAILPVFGLLLSKMISIFYETDHDELRKDSKVWALVFVAIGVVSLLVYPARFYFFGVAGGKLIQRVRKACFEKVVHMEVSWFDEAENSSGAIGARLSTDAASIRALVGDALGLLVQNIASAITGLVIAFESSWQLALIILVMVPLLGLNGFLQVKFLKGFSADAKKLYEEASQVANDAVGSIRTVASFCAEDKVMELYRGKCEGPIKTGIRKGIISGISFGISFFVLYAVYATSFYAGARLVEDGKTSFSNVFRVFFALSMAAIGISQSGSLAPDSAKAKSAAASIFSIIDRKSQIDPSDDSGITSEEVKGEIELKHVSFKYPTRPDVQIFRDLSLTIRSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGKEIQSIQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGDATEAEIIAAAELANAHKFISSLQKGYDTVVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADVIAVVKNGVIAEKGKHEVLLRKGGDYASLVALHTNASTS* 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1269 1274 MobiDBLite consensus disorder prediction 613 630 - -
Pvu3g1269 1274 SUPERFAMILY ABC transporter transmembrane region 690 1015 IPR036640 GO:0005524|GO:0016021
Pvu3g1269 1274 MobiDBLite consensus disorder prediction 613 634 - -
Pvu3g1269 1274 Pfam ABC transporter 1050 1198 IPR003439 GO:0005524
Pvu3g1269 1274 Pfam ABC transporter 390 538 IPR003439 GO:0005524
Pvu3g1269 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 609 IPR027417 -
Pvu3g1269 1274 ProSitePatterns ABC transporters family signature. 510 524 IPR017871 GO:0005524
Pvu3g1269 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 709 996 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu3g1269 1274 CDD ABC_MTABC3_MDL1_MDL2 371 609 - -
Pvu3g1269 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1021 1267 IPR027417 -
Pvu3g1269 1274 SUPERFAMILY ABC transporter transmembrane region 34 355 IPR036640 GO:0005524|GO:0016021
Pvu3g1269 1274 Gene3D - 1021 1273 IPR027417 -
Pvu3g1269 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 371 607 IPR003439 GO:0005524
Pvu3g1269 1274 MobiDBLite consensus disorder prediction 1 25 - -
Pvu3g1269 1274 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 11 1270 - -
Pvu3g1269 1274 MobiDBLite consensus disorder prediction 1 16 - -
Pvu3g1269 1274 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 344 - -
Pvu3g1269 1274 Gene3D ABC transporter type 1, transmembrane domain 94 1005 IPR036640 GO:0005524|GO:0016021
Pvu3g1269 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 336 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu3g1269 1274 SMART AAA_5 398 584 IPR003593 -
Pvu3g1269 1274 SMART AAA_5 1058 1250 IPR003593 -
Pvu3g1269 1274 Coils Coil 1269 1274 - -
Pvu3g1269 1274 CDD ABC_6TM_Pgp_ABCB1_D2_like 698 1014 - -
Pvu3g1269 1274 ProSitePatterns ABC transporters family signature. 1170 1184 IPR017871 GO:0005524
Pvu3g1269 1274 CDD ABC_MTABC3_MDL1_MDL2 1031 1265 - -
Pvu3g1269 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1031 1267 IPR003439 GO:0005524
Pvu3g1269 1274 PANTHER - 11 1270 - -
Pvu3g1269 1274 Pfam ABC transporter transmembrane region 708 979 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu3g1269 1274 Pfam ABC transporter transmembrane region 47 322 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu3g1269 1274 Gene3D - 369 622 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1269 Pvu-Chr3 30155913 30161755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1269 21 1268 Calmodulin-binding Proteins AT2G36910 45.519 0.0 1108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1269 K05658 - gmx:100800293 2118.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1269 3 30155913 30161755 Pvu3g1269 3 30155913 30161755 ECH