Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1252 ATGGGTTGCTTTGGCTTCTGCAAAGGAGATGACAGTGTGGCAATTTCTGACAGAGGACCTTTCATGCAAAACACTCCCACTGGGAACGCAAGTTATCATGGCAGACATAATGCAGTGACTGCTCCTCGGCCAATAAATTTTCAACCTATTGCTGTCCCTTCTATTACAGTAGACGAATTGAAGTCTTTAACAGATAGCTTTGGCTCAAAATCTTTCATTGGTGAGGGTGCATATGGGAAAGTATATCAAGCTACATTGAAAACTGGGCGTGCAGTGGTAATCAAAAAGCTAGATTCCAGTAATCAGCCAGAACAAGAATTTCTTTCTCAGGTCTCCATAGTATCAAGGCTAAGACATGAAAATGTTGTTGAGCTTGTTAACTATTCTGTTGATGGTTCTTTTCGTGCCCTTTCCTATGAGTATGCTCCTAAAGGATCCCTTCATGATATTCTACACGGACGAAAAGGTGTCAAGGGTGCACAACCTGGTGCATTACTCTCGTGGGCTCAGAGAGTTAAAATTGCTGTTGGAGCAGCCAGGGGACTTGAATATCTTAATGAAAAGGCAGAGATTCATATAATCCATCGTTATATTAAGTCTAGTAACATACTTCTTTTTGACGATGATGTTGCAAAGATTGCTGATTTTGATTTGTCAAATCAAGCCCCTGATGCAGCAGCACGTCTTCATTCTACCCGTGTTCTTGGGACTTTTGGTTATCATGCTCCTGAATATGCAATGACGGGACAACTCACTTCAAAAAGTGATGTTTATAGCTTTGGAGTTATACTGCTGGAACTCTTAACCGGGCGCAAACCGGTTGATCATACACTACCCCGAGGACAGCAAAGCCTTGTCACCTGGGCAACACCAAAGCTTAGTGAAGATAAGGTGAAGCAGTGTGTTGATGTTAGACTAAAGGGAGAGTACCCTTCAAAGTCCGTTGCAAAGATGGCTGCTGTTGCTGCATTGTGTGTACAATATGAAGCTGAGTTTCGGCCAAACATGAGCATTATAGTGAAAGCTTTACAGCCTCTACTGAATACTCGTTCTACTCCCTCAAAGGAATCACCAAACATGTAA 1083 0.4238 MGCFGFCKGDDSVAISDRGPFMQNTPTGNASYHGRHNAVTAPRPINFQPIAVPSITVDELKSLTDSFGSKSFIGEGAYGKVYQATLKTGRAVVIKKLDSSNQPEQEFLSQVSIVSRLRHENVVELVNYSVDGSFRALSYEYAPKGSLHDILHGRKGVKGAQPGALLSWAQRVKIAVGAARGLEYLNEKAEIHIIHRYIKSSNILLFDDDVAKIADFDLSNQAPDAAARLHSTRVLGTFGYHAPEYAMTGQLTSKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKQCVDVRLKGEYPSKSVAKMAAVAALCVQYEAEFRPNMSIIVKALQPLLNTRSTPSKESPNM* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1252 360 ProSiteProfiles Protein kinase domain profile. 67 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1252 360 Gene3D Transferase(Phosphotransferase) domain 1 143 358 - -
Pvu3g1252 360 Gene3D Phosphorylase Kinase; domain 1 32 141 - -
Pvu3g1252 360 PIRSF ILK 30 355 - -
Pvu3g1252 360 CDD STKc_IRAK 73 346 - -
Pvu3g1252 360 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Pvu3g1252 360 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 356 - -
Pvu3g1252 360 Pfam Protein tyrosine and serine/threonine kinase 72 343 IPR001245 GO:0004672|GO:0006468
Pvu3g1252 360 SUPERFAMILY Protein kinase-like (PK-like) 45 343 IPR011009 -
Pvu3g1252 360 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1252 Pvu-Chr3 29995856 30000128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1252 48 359 Receptor kinase-like Gene Family AT4G02010 47.546 9.19e-88 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Pvu3g1252 PK_Tyr_Ser-Thr 3.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1252 K13436 - gmx:547596 670.618