Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1251 ATGGAGGCTGAGTTTGGGGGTAAGAATCAGTACTTGTATGGACCTGTGGTGTCAGGAATGAAGAAGGCTGTTGCGAATGGGAAGAGGAGTTTGGAATGGGATTTGAATGATTGGAAATGGGACGGTGATCTTTTCACTGCTCAGCCACTCAATTCAGTGCCATCAGATTGTAGGAGCCGCCAGTTTTTCCCACCACATCCTGAAATTCCTGCAAAAAAGACCAATCCTTCCAACGATTGGTCTTCTTCTGCAATCAACCCTGGTGAGGGAAATAAGGAATTGGAGAAAAGGAGGAGGGGTGTTATAGGGGAAGGTGAAGGGGAGGGACTGAATGATGAGGGTGGTTCTCTTAGTTTGAACCTTGGGGGTTACGGTTACCCTTTCATGGTGGAAGGAGAGGAAAAAAGTAGAAAGAAGACAAAGGTAATTGAGACTACTACTGCTGCTGCTACCACCTCTAACCGTGCTGTTTGTCAGGTGCAAGATTGTACGGCTGATCTTGGTAATGCCAAGGATTACCACCGTAGGCACAAGGTTTGTGATGTTCATTCTAAGGCCACTATGGCACTAGTGGGAAATGTTATGCAACGTTTCTGTCAACAGTGTAGCAGGTTTCATGTCCTTCAAGAGTTTGATGAAGGGAGGAGAAGTTGTCGTAGGCGTCTGGATGGCCATAACAGGAGGAGGAGGAAAACTCATCCTGATGTTACTGTTGTTAATGAAGGCTCTCTTAAGGATGGAAGTGGCAGTAGCTATCTTTTGATGAGTCTGTTACGGATACTGACCAATTTGCATACAAATGGGTCAGATCATACAAGGAACCAGGATATACTCTCTCATCTTCTGAGGAACCTGGCAAGTCTGGCTGCTCCAAATAATGGTAGAACTTTAGCCTCCTTATTGGAGGACTCTAAAGGTTTGTTAAATGCTGGGACACCAGGAGGTGCTTATGAAGAACCCAACCTTAATTCAAACACTCCTGAAGCTTCCAGACGGCCTGGTTCTTCCATTAAGATTGATAATGGCTTCATCAGTCAGGACCCTCCAATATCCATGGCACAGTGTGAAACAGGGCCTACTAATGGTGGGACACAAGAATGTATACCTTCAGGAGATGGTGGAGTAGAAAATTCAAAATCACCTCCAGGAGCACCATTCTCAAGTATAAGTCAATCAAGGGGAAGTCTTCCATGCCAATTAACTGCAGTGGAGACTACACTTAGAAGGAACAACTTAAATAACGTTGACCTTAATAATGTATACAGTGATATGCAGAACACTGTTGAGAATCATAAGAAGCCTTATCATCATGTGGCATCTCAGATGGGATCTATTGATCTTCCCTCATGGTTGCAATGTGATTCTCTTAAATCAAGTCCTCCACAGACGAGCAGAAACTCAGATTCAACCTCTAACCAATCACCATCTAGTTCCAGTGGAGAAGCTCAGAGTCGTACAGATCGAATTGTTTTTAAACTCTTTGGCAAGGATCCAAATGATTTTCCCCTTCTTCTCCGACCACAGATTCTCAACTGGTTATCCCACAGTCCCACAGAGATAGAGAGCTATATAAGGCCAGGTTGTATCATATTAACGATATATCTTCGTCTTGAAAAATCTGCATGGGAGGAGCTCTACTGTAATCTAGGATCCAGCTTGAGAAGGCTTCTTGGCGAATCAAATGATACATTTTGGAGGACAGGATGGGTATTTGCAAGGGTGCAGCAATCTTTGGCTTTTCTGTATAACGGTCAGGTAGTCTTAGATGTGCCCTTGTGTCACAAAAGCCCACATCATTGTACGATTTCATGCATTAAACCACTTGCTGTTCCTGCAAGTGCTAGGGCTCACTTTATTGTGAAAGGCTGCAACCTTTCCCAGTCTAGTACAAGGTTGCTCTGCGCACTTGAAGGGAAGTATCTGGTACATGCTAGTTGTCATGATTTGATTGGTGGAGCTGATAAATCCATTCAGCATCTCAACTTCACTTGTCATATACCAAATGTAACCGGGAGGGGTTTTATTGAGGTGGAAGACCATGGTCTTAGCAGCTGTTCCTTTCCATTTATAGTTGCAGAAAAAGAAGTCTGTTCAGAGATCTGCAAATTGGAGAATGTGATTGAGGCTGCTGAAACCACTAATGATTTCCAGATTAAAAACCAACAAATGGAAGAAAAGACTCAAGCTCTTCATTTCTTGCAAGAAATGGGTTGGCTCCTTCATAGAAGTCGTGTGAAAGTTAGGCTAGGTCCCGTGGCTCCTATCCATGATATCTTCCAATTTAATCGGATCTCGTGGCTTGTTGACTTCTCGATGGACCATGGTTGGTGTGCTGTGATGAAAAAACTCTTGGATATTATATTTGAGGGCGGTGTTGATGCAGGAGAACATGCCTCCATTGAGCTTGCATTGTTAGACATGAGTCTTCTACACAAAGCTGTGATGAGAAACAGTAGACCTATGGTAGAACTACTGCTAAGATTTGTGCCAGTTAAAACATCAGATGCTGCTGACAGTGAAGTGAAGCAAGTTGAAAAGGCTACTCACAGATTCTTATTTAGACCTGATACTGTTGGGCCAGCTGGATTGACTCCTCTTCATGTTGCAGCAAGTATGAGTGGCTCAGATAACGTGTTGGATGCATTAATTGATGATCCAGGAATGGTAGGAATTGAAGTATGGAAAAGTGCCAGAGACAGTACAGGTTTGACCCCCCACGACTACGCATGCCTTAGGGGCTATTACTCTTACGTTCAACTCGTTCAGAACAAGACCAACAAAAAAGGTGAAAGACTACATGTGGTTGATATACCTGGTACTGTTGTAGACAGTGGTAACACAAAGCAGAAGCTATCAGATCAACATAGGACAGGTAAAATTTCTAGTTTACAGACTGAGAAGATTGAAAGCACAGAAATTGCAAGTGAATGCAGGGTATGCCAGCAGAAGTTGGCTTATGGTGGCATAAGAACTGCAGTGGTCTATAGGCCAGTCTTGCTCTCCATGGTGGCCATAGCAGCTGTGTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCTAGAGTTTACTATGTGTTCCAGCCTTTCAACTGGGAGTCATTGGAGTATGGAACAATATAA 3120 0.4362 MEAEFGGKNQYLYGPVVSGMKKAVANGKRSLEWDLNDWKWDGDLFTAQPLNSVPSDCRSRQFFPPHPEIPAKKTNPSNDWSSSAINPGEGNKELEKRRRGVIGEGEGEGLNDEGGSLSLNLGGYGYPFMVEGEEKSRKKTKVIETTTAAATTSNRAVCQVQDCTADLGNAKDYHRRHKVCDVHSKATMALVGNVMQRFCQQCSRFHVLQEFDEGRRSCRRRLDGHNRRRRKTHPDVTVVNEGSLKDGSGSSYLLMSLLRILTNLHTNGSDHTRNQDILSHLLRNLASLAAPNNGRTLASLLEDSKGLLNAGTPGGAYEEPNLNSNTPEASRRPGSSIKIDNGFISQDPPISMAQCETGPTNGGTQECIPSGDGGVENSKSPPGAPFSSISQSRGSLPCQLTAVETTLRRNNLNNVDLNNVYSDMQNTVENHKKPYHHVASQMGSIDLPSWLQCDSLKSSPPQTSRNSDSTSNQSPSSSSGEAQSRTDRIVFKLFGKDPNDFPLLLRPQILNWLSHSPTEIESYIRPGCIILTIYLRLEKSAWEELYCNLGSSLRRLLGESNDTFWRTGWVFARVQQSLAFLYNGQVVLDVPLCHKSPHHCTISCIKPLAVPASARAHFIVKGCNLSQSSTRLLCALEGKYLVHASCHDLIGGADKSIQHLNFTCHIPNVTGRGFIEVEDHGLSSCSFPFIVAEKEVCSEICKLENVIEAAETTNDFQIKNQQMEEKTQALHFLQEMGWLLHRSRVKVRLGPVAPIHDIFQFNRISWLVDFSMDHGWCAVMKKLLDIIFEGGVDAGEHASIELALLDMSLLHKAVMRNSRPMVELLLRFVPVKTSDAADSEVKQVEKATHRFLFRPDTVGPAGLTPLHVAASMSGSDNVLDALIDDPGMVGIEVWKSARDSTGLTPHDYACLRGYYSYVQLVQNKTNKKGERLHVVDIPGTVVDSGNTKQKLSDQHRTGKISSLQTEKIESTEIASECRVCQQKLAYGGIRTAVVYRPVLLSMVAIAAVCVCVALLFKSSPRVYYVFQPFNWESLEYGTI* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1251 1039 MobiDBLite consensus disorder prediction 318 332 - -
Pvu3g1251 1039 Pfam SBP domain 158 231 IPR004333 GO:0003677
Pvu3g1251 1039 Gene3D - 148 219 IPR036893 GO:0003677|GO:0005634
Pvu3g1251 1039 SUPERFAMILY Ankyrin repeat 806 923 IPR036770 -
Pvu3g1251 1039 MobiDBLite consensus disorder prediction 311 338 - -
Pvu3g1251 1039 SMART ANK_2a 805 834 IPR002110 GO:0005515
Pvu3g1251 1039 SMART ANK_2a 901 930 IPR002110 GO:0005515
Pvu3g1251 1039 SMART ANK_2a 861 891 IPR002110 GO:0005515
Pvu3g1251 1039 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 19 1038 - -
Pvu3g1251 1039 ProSiteProfiles Zinc finger SBP-type profile. 155 232 IPR004333 GO:0003677
Pvu3g1251 1039 SUPERFAMILY SBT domain 156 237 IPR036893 GO:0003677|GO:0005634
Pvu3g1251 1039 MobiDBLite consensus disorder prediction 60 96 - -
Pvu3g1251 1039 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 1038 IPR044817 GO:0003677
Pvu3g1251 1039 MobiDBLite consensus disorder prediction 456 484 - -
Pvu3g1251 1039 MobiDBLite consensus disorder prediction 381 395 - -
Pvu3g1251 1039 MobiDBLite consensus disorder prediction 355 395 - -
Pvu3g1251 1039 Gene3D - 701 928 IPR036770 -
Pvu3g1251 1039 MobiDBLite consensus disorder prediction 74 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1251 Pvu-Chr3 29957916 29964808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1251 26 1038 SBP-box Gene Family AT3G60030 43.919 0.0 725
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu3g1251 SBP 1.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1251 - - gsj:114419913 1605.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1251 3 29957916 29964808 Pvu3g1251 3 29957916 29964808 ECH
Pvu3g1251 3 29957916 29964808 Pvu9g2261 9 32517397 32528454 PCT