Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1241 ATGGCTGAGACCACAAAATACATTCCCAACTCACAATTAGAGCTTGAAGAGATATTGCAAGAAGCAGCACATCGTTGGCTTCGACCTGTTGAAATATGTGAGATACTTCGCAACTATAAGAAGTTTAAGTTAACACCAGATCCACCTATTAGGCCGCCAGCTGGATCACTATTCTTGTTCAATCGAAAAGCACTTCGTTATTTTCGCAAGGATGGTCACAGGTGGAGGAAGAAAAAAGATGGGAAAACCGTAAGAGAAGCTCATGAAAAGTTGAAGGCTGGTAGTGTGGATGTCTTGCATTGTTATTATGCCCATGGAGAGGATAATGAAAATTTCCAACGGAGAAGTTTTTGGATGCTTGACGAGCACTTACAGCACGTTGTCCTTGTTCATTATCGTCAAATTAAAGAGGGCTGCAATTCTGGCATCTCACATTTTCCGATAGTTCCAGAAACCCTGGTTGGTAGCTCTCAAAATAGTTCAGTGCTGTCCTCTACCAAAATAAACACACCAATATCGGTAGTTCAAACACCTTTCACATCAAGTGCAAATAAAGTTGATCAGAATGGACACTCTTCAGAGAACGAGGATGTCAATTCAAAAGATGGTCCTCAAGCCTCCTCTCATGCTCAGCCTATCAGCAATTCCATAATTCACAGTGCACCTTCGTTTACACATGAAGTTGCTGGTTTTTCTGAGTTGTTGAGGAACCCCTTGATTTCAACATGGTCATCTACTTTCCCTAGCTATTCTCCTGGTACTGTCTTGTCTCCCTGGACGTTAATTCAGAATTCTAGCAGAAACACAATTTATATGCACGATGAAAGACATCATATTGAAGGATCTGTTGAGGGCTCAGAAGCTGACTTCATTGTTCATAAGCTGAACAATGCTAAGTTAGATGCTGCTAACAGAATGCAAGATGGTGTAATTTTCAGAGATAGGCTCATCACTGACATGTACGTCCAACCAGTTGAAGAAAATTTACTGACTGTTGAGCAGGTTGAAAACGAGGATGGTCTAGATACATTCCGTGCTCACTTATATGATCATAATGATCATCCAATTGTTGCAACTACTAAAGTGCAAGTCGAACAGAAAATTAAAGGTGGTGGTTTAGACAATGATGAATCAAAATGGGTTGAATCTAGGGAAATGAAGAAACTTGATAGTTTTGGAAGGTGGATGGATAAGGAGATTGGAGGAGACTGTGAAAATTCTTTGATGGCTTCAGATTCTGGTAATTATTGGAGTACAGTTGGTGCTGATAACGAGGATAAGGAGGTATCTAGTTTACGAGACATACAGTTGGATATGGATTCATTAGGCCCTTCTCTTTCCCAAGAACAACTATTTAGTATCCATGACTTTTCTCCAGACTGGGCATATACTGGGGTTAGAACAAAGGTTTTAATAGTTGGCACATTTCTTGGAAGTAAAAAGCTCTCTAGTGAAACCAAATGGGGATGTATGTTTGGTGAAATTGAGGTTTCTGCTGAAGCTTTAACGGATAATGTGATACGGTGTCAGACTCCATTGCACTCACCTGGTCGTGTACCATTCTATGTTACCTGCAGTAATAGGTTAGCTTGCAGTGAGGTCAGGGAATTTCAATTTGATGAACATCCAACCAAATTTTTAGGTCCTTTGGGTATTAAAATCTCACCGGAAGTTGAGGTCCGACTTCAAATGCGACTTCTTAAACTAGTAGACTTGGGACCTGACAATAAGTGCTTGAAGTGCTCTGTTTCTGGTTGTGAAAAATGTAAATTCAAGGGAATAATGTATTCCACGAGTGATGGTAGTGGAGTTTTTAAAGAAACTTTCCAGATTGATGGAATTGATCATATAAACCCTAGAGATATACTATTTCAGAGATTAATGAGAGACAAGCTTTATGAGTGGTTGATATACAAGGTTCATGAAGGAGGAAAAGCATCACATGTGTTGGATGATGAGGGCCAAGGAGTAATACATTTGGCAGCTGCACTTGGTTATGTGTGGGCTATGGCCCCATTAGTTGCTGCTGGTATCAGTCCTAACTTCAGAGACAATCGTGGAAGAACAGGACTTCATTGGGCATCGTATTTTGGGAGAGAAGAAACTGTTATTGCTCTTGTCAAATTAGGCGCAGCCCCAGGTGCGGTTGAGGATCCAACGTCAGCATTTCCTCCAGGTCAAACAGCAGCTGATTTAGCGTCAAGTAGAGGACATAAAGGCATTGCTGGGTATTTGGCGGAAGCAGATTTGACTAATCAACTATCTGTACTGACTGTCAAGAAAAATGAGACTGGTAACATTGCCACAACCATGGCAGCTGACAGTGCTTTTCAGTCTGCTGACGATGACTCGTCTAATTTGACAATGGATGAGCAACACTATCTCAAAGAGTCCCTTGCTGTGTTTCGAAAATCAGCTCATGCAGCTGCTTCAATCCTAGCAGCCTTTAGGGCAAGGTCATTTTGTCAGAGACAATTAGCCAAAAGTAGAAGTGATATTTCAGACTCAGTACTTGACATAGTTGCCGATTCTTTGAGCAAGGTACAGAAGATGGGTCATTTTGAGGATTATTTACATTTTGCAGCTTTAAAGATTCAAAAGAGATATCGTGGATGGAAAGGAAGAAAGGACTTTTTGAAGGTAGCCAACCGCATTGTAAAAATCCAGGCTCATATTAGAGGACACCAAGTTCGTAAGCAATACAGAAAAATTGTGTGGTCTGTTAGCATTGTGGAAAAAGCGATTCTTCGTTGGAGACGGAAAGGAGCTGGTCTGCGAGGATTCCGGGGAGAGCAGCCAGGTGGTATTGATGAGTATGACTTTCTTAGCGATGGGAGAAGACAGAAATCAGAAGATGTAAAGAAAGCTCTGGATAGAGTCAAGTCCATGGTTCGCAACCCAGAGGCAAGGGATCAGTATATGAGGCTCATCTTGAAATATCAAAAGTTTAAGATTGATGATAGCGGAAGCAGTCAATCACAGCATGTTGTTTAG 2994 0.4118 MAETTKYIPNSQLELEEILQEAAHRWLRPVEICEILRNYKKFKLTPDPPIRPPAGSLFLFNRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNENFQRRSFWMLDEHLQHVVLVHYRQIKEGCNSGISHFPIVPETLVGSSQNSSVLSSTKINTPISVVQTPFTSSANKVDQNGHSSENEDVNSKDGPQASSHAQPISNSIIHSAPSFTHEVAGFSELLRNPLISTWSSTFPSYSPGTVLSPWTLIQNSSRNTIYMHDERHHIEGSVEGSEADFIVHKLNNAKLDAANRMQDGVIFRDRLITDMYVQPVEENLLTVEQVENEDGLDTFRAHLYDHNDHPIVATTKVQVEQKIKGGGLDNDESKWVESREMKKLDSFGRWMDKEIGGDCENSLMASDSGNYWSTVGADNEDKEVSSLRDIQLDMDSLGPSLSQEQLFSIHDFSPDWAYTGVRTKVLIVGTFLGSKKLSSETKWGCMFGEIEVSAEALTDNVIRCQTPLHSPGRVPFYVTCSNRLACSEVREFQFDEHPTKFLGPLGIKISPEVEVRLQMRLLKLVDLGPDNKCLKCSVSGCEKCKFKGIMYSTSDGSGVFKETFQIDGIDHINPRDILFQRLMRDKLYEWLIYKVHEGGKASHVLDDEGQGVIHLAAALGYVWAMAPLVAAGISPNFRDNRGRTGLHWASYFGREETVIALVKLGAAPGAVEDPTSAFPPGQTAADLASSRGHKGIAGYLAEADLTNQLSVLTVKKNETGNIATTMAADSAFQSADDDSSNLTMDEQHYLKESLAVFRKSAHAAASILAAFRARSFCQRQLAKSRSDISDSVLDIVADSLSKVQKMGHFEDYLHFAALKIQKRYRGWKGRKDFLKVANRIVKIQAHIRGHQVRKQYRKIVWSVSIVEKAILRWRRKGAGLRGFRGEQPGGIDEYDFLSDGRRQKSEDVKKALDRVKSMVRNPEARDQYMRLILKYQKFKIDDSGSSQSQHVV* 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1241 997 ProSiteProfiles IQ motif profile. 858 887 IPR000048 GO:0005515
Pvu3g1241 997 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 975 - -
Pvu3g1241 997 CDD IPT 453 539 - -
Pvu3g1241 997 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Pvu3g1241 997 Pfam IPT/TIG domain 454 531 IPR002909 -
Pvu3g1241 997 Gene3D Immunoglobulins 447 545 IPR013783 -
Pvu3g1241 997 SUPERFAMILY Ankyrin repeat 644 748 IPR036770 -
Pvu3g1241 997 MobiDBLite consensus disorder prediction 182 210 - -
Pvu3g1241 997 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Pvu3g1241 997 SUPERFAMILY E set domains 454 539 IPR014756 -
Pvu3g1241 997 ProSiteProfiles Ankyrin repeat profile. 686 718 IPR002110 GO:0005515
Pvu3g1241 997 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 853 909 IPR027417 -
Pvu3g1241 997 Gene3D - 630 860 IPR036770 -
Pvu3g1241 997 ProSiteProfiles IQ motif profile. 882 909 IPR000048 GO:0005515
Pvu3g1241 997 Gene3D - 861 905 - -
Pvu3g1241 997 Pfam IQ calmodulin-binding motif 861 878 IPR000048 GO:0005515
Pvu3g1241 997 Pfam IQ calmodulin-binding motif 885 902 IPR000048 GO:0005515
Pvu3g1241 997 SMART iq_5 880 902 IPR000048 GO:0005515
Pvu3g1241 997 SMART iq_5 857 879 IPR000048 GO:0005515
Pvu3g1241 997 SMART CG_1_2 18 136 IPR005559 GO:0003677
Pvu3g1241 997 SMART ANK_2a 686 715 IPR002110 GO:0005515
Pvu3g1241 997 SMART ANK_2a 725 755 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1241 Pvu-Chr3 29859348 29867209 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1241 59 977 CAMTA Transcription Factor Family AT2G22300 38.223 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Pvu3g1241 CG-1 9.8e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1241 K21596 - gmx:100818336 1680.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1241 3 29859348 29867209 Pvu3g1241 3 29859348 29867209 ECH