Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1232 ATGATCGTGAGCCCCAAGATGGTAGCGGAAGCGGAAATTATCTGTCAGCAGACCATTCCGATGTTGGACGTGAAGTATCATATTTGCGTTGCGCAAGAACACAACGTCGAGGTCGAGGTTTCGCCCAAATCGCCTTCACCTTCTGTTCCGATCTTTGGCCAAGCAGTGAATCACTCTGATATCATTAAACGTTCCAGTATGGAGACCCCTGAAGTGAGTTTTGTCCCAAATGCGCGTTCTGGTAGCTATGCTGAGATTGGGCCGCGGGTTTCTATGGATGATGAGCACATTTGTATTGACGATCTAGGTGCTCATCTTGGATTTGTGTTCAAGTACCCGATACGGAGTGCTTTTTATGCAGTTTTTGATGGTCATGGAGGGCCTGATGCAGCTGCTTTTGTTAAGAGGAATGCTATGAGATTATTTTTTGAAGATGCGAACATGCTGCAGACATATGATACTGATGCGTTCTTTCTAGACAAGTTAGAGGATTCTCATAGGAGAGCTTTTATACGGGCAGATCTTGCCTTGGCTGATGAACAAACTGTTAGTAGTTCATGTGGAACTACTGCATTGACTGCCCTTGTACTTGGAAGGCACTTGCTTGTTGCTAATGCTGGTGACTGTCGGGCAGTTCTTTGCCGGAGGGGTGTGGCTGTTGAGATGTCTAATGATCACAGGCCAAGTTTTCTGCCGGAACAGCGGAGGGTGGAGGAGGTAGGTGGATTCTTTGATGATGGATACCTCAATGGTTATCTTTCAGTAACCCGTGCCCTTGGGGATTGGGACTTGAAATTTCCACTCGGTGCTGCATCTCCTCTTATTGCTGAGCCAGATGTTCGACTGGCCACATTGAGTGAGGAGGATGAGTTCTTGATCATTGGGTGTGATGGGATTTGGGATGTAATGTCAAGCCAAGTTGCAGTTAGTCTTGTTCGCCGAGGATTAAGAAGGCATAATGACCCACAGAAGTGTGCTATGGAACTAGTCAAGGAAGCATTGCGCCTGGATACATCGGATAATCTCACTGTGATTGTTGTGTGTTTGTCGCCCATTGAAACCATTGTTGAATCATGTCCACCCCAAAGGCGAAGATTCAAAGCTTGCAGCCTGTCTGAAGAGGCCCGTAATAGGTTGAAGAGCTTGATTGAGCGAAATTGA 1161 0.4668 MIVSPKMVAEAEIICQQTIPMLDVKYHICVAQEHNVEVEVSPKSPSPSVPIFGQAVNHSDIIKRSSMETPEVSFVPNARSGSYAEIGPRVSMDDEHICIDDLGAHLGFVFKYPIRSAFYAVFDGHGGPDAAAFVKRNAMRLFFEDANMLQTYDTDAFFLDKLEDSHRRAFIRADLALADEQTVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGVAVEMSNDHRPSFLPEQRRVEEVGGFFDDGYLNGYLSVTRALGDWDLKFPLGAASPLIAEPDVRLATLSEEDEFLIIGCDGIWDVMSSQVAVSLVRRGLRRHNDPQKCAMELVKEALRLDTSDNLTVIVVCLSPIETIVESCPPQRRRFKACSLSEEARNRLKSLIERN* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1232 386 PANTHER PROTEIN PHOSPHATASE 2C 7 373 IPR015655 GO:0004722|GO:0006470
Pvu3g1232 386 SMART PP2C_4 69 347 IPR001932 -
Pvu3g1232 386 ProSiteProfiles PPM-type phosphatase domain profile. 79 349 IPR001932 -
Pvu3g1232 386 Pfam Protein phosphatase 2C 89 341 IPR001932 -
Pvu3g1232 386 Gene3D - 58 352 IPR036457 -
Pvu3g1232 386 SUPERFAMILY PP2C-like 72 351 IPR036457 -
Pvu3g1232 386 SMART PP2C_SIG_2 94 349 IPR001932 -
Pvu3g1232 386 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169
Pvu3g1232 386 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 7 373 - -
Pvu3g1232 386 CDD PP2Cc 79 349 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1232 Pvu-Chr3 29616330 29618826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1232 1 383 PP2C-type Phosphatase Gene Family AT1G48040 56.313 1.54e-146 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1232 K14803 - gmx:100775577 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1232 3 29616330 29618826 Pvu3g1232 3 29616330 29618826 ECH
Pvu3g1232 3 29616330 29618826 Pvu6g1268 6 23690825 23693341 PCT