Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1220 ATGGTGCTACAGGATGAACAAGGAGTACAAATCCATCATCGATCAGGAGGACACTTATATATAAATTCCAGAGTAAGATATCTGAAGTTTACTATTATTAACATGATTAGTATTCTACGAAGATATAATTGGAATTTGACTAGAGGTGGCACCGAGCAAGAGTTGACAAAGGAAGGAAAAGTTACCAAAATAAATGTCATCTCTATAGATTGTGATGGGGAAGTGGACAATGTAGTCATATCTATAGAATTTGCCAAAGCCAAGTTGTTCAGAGAGAAAACTCCTGAAGATGGGTTTCTTCATGGCACCGTCAGGAACACCATAGCAGGGTTGAAGGATTGTAGAGAAGTAAACGTCATTACATTTTTAAATTTTTCATATGTTTTTTTTCTTACTGATATTTATATTTTATTGAAACAAGTCAACACGTTTATAGTTCTTGCAACTATAAAACATATTGTGGATGATGATGATTGGTGGTATACTGCCTGTATCTGTAACAAGGCAATTTACCCCGACTCCAAAATATTTTTTTGTGAAAAGTGCAACAAGCATGTAATGAACGTGTCCCTTAGGTATAAAGTACAACTCCATGTGATTGATGACACTAATTCTACAATGTTCATGCTTTTTGACAGAGAAGCCAATTCACTTACGGATAAATCATATGCTGAAATCTTTGAAAGTCATGATAAGGAAATATATGATGAAGATGATAATAAAGGAAAAGGAAAGTTGACAATGACTGGTGCTTCCTGTGAGAACATCACAGAGAGACAATCTTCACCAATGGTGCAAGTTGTAGAGGACAATTTGCCACTAAAGACAATCAAAAGAACTGTTAAAATTGAGAAGTGA 858 0.3485 MVLQDEQGVQIHHRSGGHLYINSRVRYLKFTIINMISILRRYNWNLTRGGTEQELTKEGKVTKINVISIDCDGEVDNVVISIEFAKAKLFREKTPEDGFLHGTVRNTIAGLKDCREVNVITFLNFSYVFFLTDIYILLKQVNTFIVLATIKHIVDDDDWWYTACICNKAIYPDSKIFFCEKCNKHVMNVSLRYKVQLHVIDDTNSTMFMLFDREANSLTDKSYAEIFESHDKEIYDEDDNKGKGKLTMTGASCENITERQSSPMVQVVEDNLPLKTIKRTVKIEK* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1220 285 CDD RPA1_DBD_C 144 237 IPR013955 -
Pvu3g1220 285 PANTHER REPLICATION FACTOR A 1, RFA1 56 227 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pvu3g1220 285 Pfam Replication factor-A C terminal domain 144 233 IPR013955 -
Pvu3g1220 285 Gene3D - 131 272 IPR012340 -
Pvu3g1220 285 SUPERFAMILY Nucleic acid-binding proteins 143 232 IPR012340 -
Pvu3g1220 285 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 56 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1220 Pvu-Chr3 29317826 29320068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1220 144 215 Core DNA Replication Machinery Family AT5G08020 38.667 3.04e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1220 - - pvu:PHAVU_003G117700g 580.096