Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1207 ATGAACTACCACAACACGCGCCGGAGCCCTTCCGGCTTCCGCTCTGGCGCCGCCCCTAACCACCGCTCCTTAGACAGTCCTCCGCGTCGCTCTCCTGGCAGGGGAGGAGGATTCCGGCCGATGGGAGGGGAAGGTCCTGGTGAATTCGGATTCAACGGCCACCAGCCGCCACCGCCGCTGGTTGGCCAAAAACGAGGGTTTCCTGTCTCCGGACGCGGTGGCGGTTCGCCCGATCGTTTAGATGGTGGAAATTTTGCTAAACTTTTTGTTGGATCTGTTCCCCGAACAGCTGTTGAAGATGATATTCGCCCGCTGTTTGAAGAACATGGGAATGTGATTGAGGTTGCCCTCATCAAAGATAGAAAGACAGGACAACATCAAGGTTGTTGTTTCATAAAATATTCTACTGCAGAAGAAGCTGATCAGGCAATTAGAGCACTGCATAATCAACATACTCTTCCTGGAGGTGTTGGTCCAATACAAGTGCGATATGCTGATGGTGAACGGGAACGCCTTGGTGCAGTTGAGTACAAGTTATTTGTGGGCTCTCTGAACAAACAGGCTCCCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGCAGAGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTCAAATACTCACACAGAGATATGGCTCTGGCAGCTATTAATGCACTTGATGGTGTCTACACAATGAGAGGTTGTGAGCAACCACTAATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGCCAAGGAGATTCCAGGGGTCAGGCCTTTGGAGGCCCAGGATTTGGTCCTAGATTTGATGCACCAGGCTCAAGACTTCCATCCAATATTACTGATCCTATGGGTGATCGAATGCCTCCCCCTAATGCTTGGCGACCAATGCATCCGCCAAATATGGGGCCATCCACTAATGCTGCTCTTCATGGCATGGGGCCACCAATGCTTCCAAGATCTGGTGAAATGGTGCCTACAAATGCAGGTGGTCCTATGACTGGCTTTGGAGGCCCCATGGATGGTCGTTTTCAAGTTCAGTCTATGCCATCAATGTCACAACAGAATTTCAATCAGCCTATGCCACAAATTCCACCACTCAATCAACAAATATCACCCTTACAGAAGAATATCCAATCATCCCAGGAACTGCCACCATCCAATCAGTTGTACCCTCAAGCACCAGTTCCCTACCCACAAGCATCTCTTAGACAGCATGGCCAGCCACTTCTTCCTCCTTCTGCTGGCCCTCTTCAATCTCAGCAGATACATGGAGTAAGTGGACAGTTTCCAACTTCTCAACCGCAAACTCAACAGAGTGCTTTGTCTGCTGCATTTCCTCAGACTCCTCTTGATGCCAGCATGCATTCTAATACTGCATTAGCTACAAATCAACAGCAAGTTCCTCCCTCCATGACACAGCAGCCTCTTCAGCAATCCCCTTCTCCGTTAGCTCAGATGTTATCGCAACAAACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATGCAGCCTTCTAGTCAAGCATTAACATTGCAGCAAAATGCAGAAGCTACTAAAAAGCAGTCTCAATGGGCTGGGACTGTGGCACAAACAGTGGCCAGCACTCATGCAACTGCCCCTGCTGCAGACGCCCCTTCATCCAAACTTGCTACTTCAGCCTTACAAGCAATAAACCATAACTCGGCTCATGCCAAATGTAATTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGCGTTACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACGTTATATGAACAGCAACAGCAAAGGGTATCTGTTCAGCAGCCTCAAACCCAGTCACAGCCTTCAGTGCTACCTGCCCAGCAAATTCCCCAATTCCAACAGGTTCAGCCTCAAAGTCATCTCCAAGGTCAAGTTCTTCACCAGCAACAAGTGCAACAGCCTCCCTTGTCCTCTTCATTCCAGGCATATGGCGTTACAGGCCCTCAAAATGTTCAGGAAGTTGGTTATAAACAGTTGCAGCCAACTGTTATTTCAGCTGGTGATCCAGGACGTTACTCACAGGGTGTTCATTCTACACACGAATTGATGTGGAAAAATAAGCCTTCAGGAGTTTGA 2196 0.4813 MNYHNTRRSPSGFRSGAAPNHRSLDSPPRRSPGRGGGFRPMGGEGPGEFGFNGHQPPPPLVGQKRGFPVSGRGGGSPDRLDGGNFAKLFVGSVPRTAVEDDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYSTAEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALDGVYTMRGCEQPLIVRFADPKRPRQGDSRGQAFGGPGFGPRFDAPGSRLPSNITDPMGDRMPPPNAWRPMHPPNMGPSTNAALHGMGPPMLPRSGEMVPTNAGGPMTGFGGPMDGRFQVQSMPSMSQQNFNQPMPQIPPLNQQISPLQKNIQSSQELPPSNQLYPQAPVPYPQASLRQHGQPLLPPSAGPLQSQQIHGVSGQFPTSQPQTQQSALSAAFPQTPLDASMHSNTALATNQQQVPPSMTQQPLQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALTLQQNAEATKKQSQWAGTVAQTVASTHATAPAADAPSSKLATSALQAINHNSAHAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLYEQQQQRVSVQQPQTQSQPSVLPAQQIPQFQQVQPQSHLQGQVLHQQQVQQPPLSSSFQAYGVTGPQNVQEVGYKQLQPTVISAGDPGRYSQGVHSTHELMWKNKPSGV* 732
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1207 731 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 247 IPR000504 GO:0003723
Pvu3g1207 731 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 151 IPR000504 GO:0003723
Pvu3g1207 731 Pfam WW domain 591 617 IPR001202 GO:0005515
Pvu3g1207 731 Gene3D - 81 173 IPR012677 -
Pvu3g1207 731 CDD RRM2_FCA 178 257 IPR034645 -
Pvu3g1207 731 MobiDBLite consensus disorder prediction 344 453 - -
Pvu3g1207 731 MobiDBLite consensus disorder prediction 1 80 - -
Pvu3g1207 731 SUPERFAMILY RNA-binding domain, RBD 177 279 IPR035979 GO:0003676
Pvu3g1207 731 ProSiteProfiles WW/rsp5/WWP domain profile. 592 619 IPR001202 GO:0005515
Pvu3g1207 731 Gene3D - 585 634 - -
Pvu3g1207 731 PANTHER TRANSFORMER-2-RELATED 53 688 - -
Pvu3g1207 731 CDD WW 589 619 IPR001202 GO:0005515
Pvu3g1207 731 ProSitePatterns WW/rsp5/WWP domain signature. 592 617 IPR001202 GO:0005515
Pvu3g1207 731 MobiDBLite consensus disorder prediction 474 503 - -
Pvu3g1207 731 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 167 IPR000504 GO:0003723
Pvu3g1207 731 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 53 688 - -
Pvu3g1207 731 SMART ww_5 587 619 IPR001202 GO:0005515
Pvu3g1207 731 MobiDBLite consensus disorder prediction 424 453 - -
Pvu3g1207 731 MobiDBLite consensus disorder prediction 257 313 - -
Pvu3g1207 731 SMART rrm1_1 178 253 IPR000504 GO:0003723
Pvu3g1207 731 SMART rrm1_1 87 163 IPR000504 GO:0003723
Pvu3g1207 731 MobiDBLite consensus disorder prediction 356 399 - -
Pvu3g1207 731 Gene3D - 174 265 IPR012677 -
Pvu3g1207 731 SUPERFAMILY WW domain 591 624 IPR036020 GO:0005515
Pvu3g1207 731 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 257 IPR000504 GO:0003723
Pvu3g1207 731 SUPERFAMILY RNA-binding domain, RBD 31 165 IPR035979 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pvu3g1207 Pvu-Chr3 29057033 29068184 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1207 85 262 Eukaryotic Initiation Factors Gene Family AT4G34110 26.562 1.75e-13 72.0
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1207 - - gmx:100798390 1104.74
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1207 3 29057033 29068184 Pvu3g1207 3 29057033 29068184 ECH