Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu3g1207 | ATGAACTACCACAACACGCGCCGGAGCCCTTCCGGCTTCCGCTCTGGCGCCGCCCCTAACCACCGCTCCTTAGACAGTCCTCCGCGTCGCTCTCCTGGCAGGGGAGGAGGATTCCGGCCGATGGGAGGGGAAGGTCCTGGTGAATTCGGATTCAACGGCCACCAGCCGCCACCGCCGCTGGTTGGCCAAAAACGAGGGTTTCCTGTCTCCGGACGCGGTGGCGGTTCGCCCGATCGTTTAGATGGTGGAAATTTTGCTAAACTTTTTGTTGGATCTGTTCCCCGAACAGCTGTTGAAGATGATATTCGCCCGCTGTTTGAAGAACATGGGAATGTGATTGAGGTTGCCCTCATCAAAGATAGAAAGACAGGACAACATCAAGGTTGTTGTTTCATAAAATATTCTACTGCAGAAGAAGCTGATCAGGCAATTAGAGCACTGCATAATCAACATACTCTTCCTGGAGGTGTTGGTCCAATACAAGTGCGATATGCTGATGGTGAACGGGAACGCCTTGGTGCAGTTGAGTACAAGTTATTTGTGGGCTCTCTGAACAAACAGGCTCCCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGCAGAGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTCAAATACTCACACAGAGATATGGCTCTGGCAGCTATTAATGCACTTGATGGTGTCTACACAATGAGAGGTTGTGAGCAACCACTAATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGCCAAGGAGATTCCAGGGGTCAGGCCTTTGGAGGCCCAGGATTTGGTCCTAGATTTGATGCACCAGGCTCAAGACTTCCATCCAATATTACTGATCCTATGGGTGATCGAATGCCTCCCCCTAATGCTTGGCGACCAATGCATCCGCCAAATATGGGGCCATCCACTAATGCTGCTCTTCATGGCATGGGGCCACCAATGCTTCCAAGATCTGGTGAAATGGTGCCTACAAATGCAGGTGGTCCTATGACTGGCTTTGGAGGCCCCATGGATGGTCGTTTTCAAGTTCAGTCTATGCCATCAATGTCACAACAGAATTTCAATCAGCCTATGCCACAAATTCCACCACTCAATCAACAAATATCACCCTTACAGAAGAATATCCAATCATCCCAGGAACTGCCACCATCCAATCAGTTGTACCCTCAAGCACCAGTTCCCTACCCACAAGCATCTCTTAGACAGCATGGCCAGCCACTTCTTCCTCCTTCTGCTGGCCCTCTTCAATCTCAGCAGATACATGGAGTAAGTGGACAGTTTCCAACTTCTCAACCGCAAACTCAACAGAGTGCTTTGTCTGCTGCATTTCCTCAGACTCCTCTTGATGCCAGCATGCATTCTAATACTGCATTAGCTACAAATCAACAGCAAGTTCCTCCCTCCATGACACAGCAGCCTCTTCAGCAATCCCCTTCTCCGTTAGCTCAGATGTTATCGCAACAAACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATGCAGCCTTCTAGTCAAGCATTAACATTGCAGCAAAATGCAGAAGCTACTAAAAAGCAGTCTCAATGGGCTGGGACTGTGGCACAAACAGTGGCCAGCACTCATGCAACTGCCCCTGCTGCAGACGCCCCTTCATCCAAACTTGCTACTTCAGCCTTACAAGCAATAAACCATAACTCGGCTCATGCCAAATGTAATTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGCGTTACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACGTTATATGAACAGCAACAGCAAAGGGTATCTGTTCAGCAGCCTCAAACCCAGTCACAGCCTTCAGTGCTACCTGCCCAGCAAATTCCCCAATTCCAACAGGTTCAGCCTCAAAGTCATCTCCAAGGTCAAGTTCTTCACCAGCAACAAGTGCAACAGCCTCCCTTGTCCTCTTCATTCCAGGCATATGGCGTTACAGGCCCTCAAAATGTTCAGGAAGTTGGTTATAAACAGTTGCAGCCAACTGTTATTTCAGCTGGTGATCCAGGACGTTACTCACAGGGTGTTCATTCTACACACGAATTGATGTGGAAAAATAAGCCTTCAGGAGTTTGA | 2196 | 0.4813 | MNYHNTRRSPSGFRSGAAPNHRSLDSPPRRSPGRGGGFRPMGGEGPGEFGFNGHQPPPPLVGQKRGFPVSGRGGGSPDRLDGGNFAKLFVGSVPRTAVEDDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYSTAEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALDGVYTMRGCEQPLIVRFADPKRPRQGDSRGQAFGGPGFGPRFDAPGSRLPSNITDPMGDRMPPPNAWRPMHPPNMGPSTNAALHGMGPPMLPRSGEMVPTNAGGPMTGFGGPMDGRFQVQSMPSMSQQNFNQPMPQIPPLNQQISPLQKNIQSSQELPPSNQLYPQAPVPYPQASLRQHGQPLLPPSAGPLQSQQIHGVSGQFPTSQPQTQQSALSAAFPQTPLDASMHSNTALATNQQQVPPSMTQQPLQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALTLQQNAEATKKQSQWAGTVAQTVASTHATAPAADAPSSKLATSALQAINHNSAHAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLYEQQQQRVSVQQPQTQSQPSVLPAQQIPQFQQVQPQSHLQGQVLHQQQVQQPPLSSSFQAYGVTGPQNVQEVGYKQLQPTVISAGDPGRYSQGVHSTHELMWKNKPSGV* | 732 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu3g1207 | 731 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 179 | 247 | IPR000504 | GO:0003723 | |
Pvu3g1207 | 731 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 88 | 151 | IPR000504 | GO:0003723 | |
Pvu3g1207 | 731 | Pfam | WW domain | 591 | 617 | IPR001202 | GO:0005515 | |
Pvu3g1207 | 731 | Gene3D | - | 81 | 173 | IPR012677 | - | |
Pvu3g1207 | 731 | CDD | RRM2_FCA | 178 | 257 | IPR034645 | - | |
Pvu3g1207 | 731 | MobiDBLite | consensus disorder prediction | 344 | 453 | - | - | |
Pvu3g1207 | 731 | MobiDBLite | consensus disorder prediction | 1 | 80 | - | - | |
Pvu3g1207 | 731 | SUPERFAMILY | RNA-binding domain, RBD | 177 | 279 | IPR035979 | GO:0003676 | |
Pvu3g1207 | 731 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 592 | 619 | IPR001202 | GO:0005515 | |
Pvu3g1207 | 731 | Gene3D | - | 585 | 634 | - | - | |
Pvu3g1207 | 731 | PANTHER | TRANSFORMER-2-RELATED | 53 | 688 | - | - | |
Pvu3g1207 | 731 | CDD | WW | 589 | 619 | IPR001202 | GO:0005515 | |
Pvu3g1207 | 731 | ProSitePatterns | WW/rsp5/WWP domain signature. | 592 | 617 | IPR001202 | GO:0005515 | |
Pvu3g1207 | 731 | MobiDBLite | consensus disorder prediction | 474 | 503 | - | - | |
Pvu3g1207 | 731 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 86 | 167 | IPR000504 | GO:0003723 | |
Pvu3g1207 | 731 | PANTHER | FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 | 53 | 688 | - | - | |
Pvu3g1207 | 731 | SMART | ww_5 | 587 | 619 | IPR001202 | GO:0005515 | |
Pvu3g1207 | 731 | MobiDBLite | consensus disorder prediction | 424 | 453 | - | - | |
Pvu3g1207 | 731 | MobiDBLite | consensus disorder prediction | 257 | 313 | - | - | |
Pvu3g1207 | 731 | SMART | rrm1_1 | 178 | 253 | IPR000504 | GO:0003723 | |
Pvu3g1207 | 731 | SMART | rrm1_1 | 87 | 163 | IPR000504 | GO:0003723 | |
Pvu3g1207 | 731 | MobiDBLite | consensus disorder prediction | 356 | 399 | - | - | |
Pvu3g1207 | 731 | Gene3D | - | 174 | 265 | IPR012677 | - | |
Pvu3g1207 | 731 | SUPERFAMILY | WW domain | 591 | 624 | IPR036020 | GO:0005515 | |
Pvu3g1207 | 731 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 177 | 257 | IPR000504 | GO:0003723 | |
Pvu3g1207 | 731 | SUPERFAMILY | RNA-binding domain, RBD | 31 | 165 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu3g1207 | Pvu-Chr3 | 29057033 | 29068184 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu3g1207 | 85 | 262 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 26.562 | 1.75e-13 | 72.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu3g1207 | - | - | gmx:100798390 | 1104.74 |