Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1206 ATGGAGGAGAAGAGAGAGAAAGAAGCGAACTCAAAGTCATCATCCACCATGGCAAATTCTGTGGCATTTTCCGACGAGATTCCCAACATGACCATGACCATGTCCTTCCCTTTCTCCCCTGCTTTCTCCACCATCTTTGACATCATGCCACCTCTTCCACCACCACCATCTTCATCTTTCTCCCACGATCCAAAAGCTCCAAACTTTGCCTTCCTCGACTTGCTCGCTGTCCCTGATTATACCCCTTCCTTATTCGACTGGCCCCAAAACACCGCCCTCACCTCACCCCCACCGCCACCACCCCCCACTCAAATCACCCACCCACTTCCCTCGCCTGCCAGCTCCAATGTCCCCGACGGAGGCTCCGAGGTCCTCAACACTCCGCCGTCTCCAAACTACTCCTCGATTTCCTCCTCCTCGAATGAGGCCGCCGCGGCCGCCGCCAACAAAGCAACTGGAAATGAAGATGAAGCTGAGGAGGATGAAACGACAACAGATGCAGCAGGCAAAGGAGAAGACCAAGATCAAGACAAGTCTAAGAATCAGCTGAAGCCAAAAAAGAAGCACCAAAAGAAGCCAAGGGAACCAAGATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTATAGGTGGCGCAAGTACGGTCAGAAAGCCGTCAAAAACAGCCCTCATCCCAGGAGCTACTATCGTTGCACCACCGCGGCATGCGGCGTGAAGAAGCGCGTGGAGCGTTCCTCGGAGGACCCTTCGGTGGTGGTGACAACCTACGAGGGGCAACACACGCACCCTTGTCCTGCCACGTCACGGGCTAGCCTCGGGTTCTTGCACTCCGAACCAAGTGTGCTCGGACCCACCAGTGGACTCTTTATGCTGCCCCAACAACACCAACAGTTTCGTCATGACCAAGCACAAGCACAGGCACAAGCTCAAGCTCAAGTAGCAATGTTATACAACTCCACCACCACCTCATCTCCATCATCACATTTGAATGTTGTTAACTCAGCTACCTGTGTAAACAACTATGCCAATGCGTCGTCGTTGAGTGGGTTCTTTCAGTGCCAAGAGAATGAGCGAGGTTTTGCGCCATCAAGTATGAGAGGTCCTCATCAGGGTTTGTTCAATGGGCTTCTTCAGGACATTGTGCCAACGCAGATGATGAGTGAAGAGAGGGGAGATCGTGTGTAG 1197 0.528 MEEKREKEANSKSSSTMANSVAFSDEIPNMTMTMSFPFSPAFSTIFDIMPPLPPPPSSSFSHDPKAPNFAFLDLLAVPDYTPSLFDWPQNTALTSPPPPPPPTQITHPLPSPASSNVPDGGSEVLNTPPSPNYSSISSSSNEAAAAAANKATGNEDEAEEDETTTDAAGKGEDQDQDKSKNQLKPKKKHQKKPREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTTAACGVKKRVERSSEDPSVVVTTYEGQHTHPCPATSRASLGFLHSEPSVLGPTSGLFMLPQQHQQFRHDQAQAQAQAQAQVAMLYNSTTTSSPSSHLNVVNSATCVNNYANASSLSGFFQCQENERGFAPSSMRGPHQGLFNGLLQDIVPTQMMSEERGDRV* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1206 398 SUPERFAMILY WRKY DNA-binding domain 201 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu3g1206 398 MobiDBLite consensus disorder prediction 88 199 - -
Pvu3g1206 398 SMART WRKY_cls 209 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu3g1206 398 MobiDBLite consensus disorder prediction 92 108 - -
Pvu3g1206 398 MobiDBLite consensus disorder prediction 109 147 - -
Pvu3g1206 398 Gene3D WRKY domain 195 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu3g1206 398 Pfam WRKY DNA -binding domain 210 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu3g1206 398 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 69 387 - -
Pvu3g1206 398 MobiDBLite consensus disorder prediction 164 182 - -
Pvu3g1206 398 ProSiteProfiles WRKY domain profile. 204 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu3g1206 398 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 69 387 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1206 Pvu-Chr3 29019242 29021426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1206 13 392 WRKY Transcription Factor Family AT5G49520 39.594 2.91e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pvu3g1206 WRKY 1.3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1206 - - gsj:114394278 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1206 3 29019242 29021426 Pvu3g1206 3 29019242 29021426 ECH
Pvu3g1206 3 29019242 29021426 Pvu2g0844 2 12429691 12436481 PCT
Pvu6g1246 6 23452021 23455089 Pvu3g1206 3 29019242 29021426 PCT