Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu3g1204 | ATGGAACCAGGAAACCCTTCGTCGCCGGATCCCGAATCGCCGACCTCTCCTTCCGTTGGTTTCAACACCGACCAGATTCCTCACACTCACACCAGCCGTGCCTCCGAGGACGACGAGGCTTCCGTTGACCTCGACATCGTACGAGACGATCTTGATGAACAACCCGTGGAAGAGGAAGATGGAGAGGATCTTTTCAACGACAATTTCATGGATGACTATCGGAGAATGGATGAGGCTGACCAGTTTGAATCGTTCGGACTGGATGACTCCTTGGAAGATGACAGAGACTTTGATCAGATCATCGAGGATCGAAGGGCCGCGGAGATTGAAATCGACGCACGTGAGGGGCGCGTTTCCAATCGCAGCAAGCTTCCCCAGCTTCTCCACGACCAAGATACAGATGATGATAGTCACAGGCCTTCTAAAAGGGCTCGAGCTGATTTTAGAGCTTCTTTACCAAGTGATGATGATCTGCAAAGTTCACCTGGAAGGTCAAGAGGTCACTCAAGAGAGGATGTTCCTATGACTGATCAAACCGAGGATGATAGAGATGATGATGAATTTGATGATGGGTATGAGATGTATCATGTTCAAGGAACACTTAGGGAGTGGGTTACAAGAGATGAAGTGCGCCGCTTTATAGCCAGGAAATTCAAGGACTTCTTACTTACGTATGTGAATCCGAAAAATGAACTCCGGGACAAGGAATATGTGTGGCTGATAAATGAGATGGTGTCAGCTAGTAAATGCAGTTTAGAGATAGATTACAAACAATTTATCTATGTTCATCCCAACATCGCCATTTGGCTGGCTGATGCGCCTCAGTCTGTATTAGAAGTAATGGAAGATGTAACCAAAAGCGTTGTCTTTGAATTACATCCAAACTACAGAAATATTCACCAAAAGATTTATGTACGCATTACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAGGCAAATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACTAGGCGCTCCGGAGTTTTCCCCCAGTTGCAGCAGGTTAAGTATGACTGTAACAAATGTGGGGCAATTTTGGGACCTTTTTTCCAGAATTCCTATTCTGAGGTGAAAGTTGGATCCTGTCCTGAGTGCCAATCGAAAGGACCATTCACTGTCAATATTGAACAGACCATTTATAGGAATTTTCAGAAGCTTACCCTCCAAGAAAGTCCAGGAATAGTTCCTGCTGGTCGGCTTCCAAGATACAAGGAAGTGATATTATTGAATGATCTTATTGACTGCGCTCGCCCTGGCGAAGAGATTGAGGTCACTGGTGTTTATACCAATAATTTTGACTTATCACTAAACACAAAAAATGGGTTCCCAGTGTTTGCCACTGTTGTTGAGGCAAATTATGTTACGAAAAAGCAAGACCTCTTCTCTGCTTACAAACTTACACAGGAAGACATTGCAGAGATTGAAAATTTGTCCAAAGACCCTCGAATCGGAGAAAGGATTGTTAAGTCCATTGCTCCATCAATCTATGGTCACGATGACATTAAAACTGCAATCGCTTTAGCTATGTTTGGTGGCCAAGAAAAAAATGTCGAAGGAAAGCATCGGTTGCGAGGAGACATAAATGTTCTACTTCTTGGTGATCCAGGAACAGCGAAGTCTCAATTTCTCAAGTACGTTGAAAAAACGGGACAGAGAGCTGTATACACGACTGGCAAAGGGGCTTCTGCCGTGGGTTTAACAGCTGCTGTTCACATGGATCCAGTCACACGGGAGTGGACTCTTGAGGGAGGAGCCCTTGTTCTAGCCGACAGAGGAATTTGTCTTATTGATGAGTTTGACAAGATGAATGACCAAGATAGGGTGAGTATCCACGAAGCCATGGAGCAGCAGAGTATAAGCATATCAAAAGCTGGAATTGTTACATCTCTTCAGGCACGCTGTTCTGTAATTGCTGCTGCAAATCCTGTTGGAGGAAGATATGATTCCTCCAAAACATTCTCTCAGAATGTTGAATTGACAGATCCTATTATTTCTCGTTTTGATGTTCTCTGCGTTGTGAAGGATGTTGTTGATCCCGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGACAGTCACTTCAAGTCGCAACCCAAAGGTGCTAACCGAGATGACAAGTCCTATAGTGAGTCCCAAGATGTCCATGAATCTGCTGTGCCAGCTGATCCAGAGATACTTCCTCAAGATATGCTGAAGAAGTACATCACATATGCGAAGTTGAATATTTTTCCAAGGTTACAAGATGCCGATATGGATAAACTGTCTCATGTCTATGCTGAATTGCGGAGGGAATCTTCACACGGACAAGGAGTCCCTATTGCTGTAAGGCACATTGAATCCATGATAAGGATGTCTGAAGCTCATGCGAGAATGCATCTCAGACAACATGTTACACAAGAGGATGTGGACATGGCAATTCGTGTTCTACTTGAATCATTCATTTCAACACAAAAGTTTGGGGTTCAGAAGGCTCTTCAAAAGAGCTTTAGAAAGTACATGACTTTCAAGAAGGACTATAATGAACTGCTCCTTTATATTCTCCGGGAGCTTGTAAAGAATGCTCTGCATTTCGAAGAAATTGTCACTGGGTCTACTTCAGGGATAACTTATGTAGATGTTAAAGTAGATGATCTGTCCAACAAGGCTCAAGAGCATGACATATATGATCTGAAACCATTCTTTAATAGCAGCCAGTTTTCAAGGGCCAATTTTGTATTGGATGAAGAACGGAGAGTGATTAGACATCGCCTAGTTTGA | 2793 | 0.4339 | MEPGNPSSPDPESPTSPSVGFNTDQIPHTHTSRASEDDEASVDLDIVRDDLDEQPVEEEDGEDLFNDNFMDDYRRMDEADQFESFGLDDSLEDDRDFDQIIEDRRAAEIEIDAREGRVSNRSKLPQLLHDQDTDDDSHRPSKRARADFRASLPSDDDLQSSPGRSRGHSREDVPMTDQTEDDRDDDEFDDGYEMYHVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNELRDKEYVWLINEMVSASKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVTKSVVFELHPNYRNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDIAEIENLSKDPRIGERIVKSIAPSIYGHDDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHMDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSQNVELTDPIISRFDVLCVVKDVVDPVTDEMLATFVVDSHFKSQPKGANRDDKSYSESQDVHESAVPADPEILPQDMLKKYITYAKLNIFPRLQDADMDKLSHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLESFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYILRELVKNALHFEEIVTGSTSGITYVDVKVDDLSNKAQEHDIYDLKPFFNSSQFSRANFVLDEERRVIRHRLV* | 931 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu3g1204 | 930 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 505 | 828 | IPR027417 | - | |
| Pvu3g1204 | 930 | MobiDBLite | consensus disorder prediction | 127 | 152 | - | - | |
| Pvu3g1204 | 930 | Gene3D | - | 316 | 441 | IPR012340 | - | |
| Pvu3g1204 | 930 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| Pvu3g1204 | 930 | Pfam | MCM P-loop domain | 483 | 705 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pvu3g1204 | 930 | ProSitePatterns | MCM family signature. | 604 | 612 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Pvu3g1204 | 930 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 325 | 342 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pvu3g1204 | 930 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 348 | 360 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pvu3g1204 | 930 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 383 | 397 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pvu3g1204 | 930 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 444 | 455 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pvu3g1204 | 930 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 459 | 470 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pvu3g1204 | 930 | Pfam | MCM OB domain | 315 | 442 | IPR033762 | - | |
| Pvu3g1204 | 930 | MobiDBLite | consensus disorder prediction | 116 | 190 | - | - | |
| Pvu3g1204 | 930 | MobiDBLite | consensus disorder prediction | 708 | 731 | - | - | |
| Pvu3g1204 | 930 | CDD | MCM2 | 498 | 824 | - | - | |
| Pvu3g1204 | 930 | MobiDBLite | consensus disorder prediction | 161 | 177 | - | - | |
| Pvu3g1204 | 930 | Gene3D | - | 475 | 848 | IPR027417 | - | |
| Pvu3g1204 | 930 | MobiDBLite | consensus disorder prediction | 14 | 29 | - | - | |
| Pvu3g1204 | 930 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 536 | 551 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pvu3g1204 | 930 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 596 | 610 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pvu3g1204 | 930 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 624 | 637 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pvu3g1204 | 930 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 648 | 660 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pvu3g1204 | 930 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 675 | 683 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pvu3g1204 | 930 | SUPERFAMILY | Nucleic acid-binding proteins | 217 | 464 | IPR012340 | - | |
| Pvu3g1204 | 930 | SMART | mcm | 312 | 826 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pvu3g1204 | 930 | MobiDBLite | consensus disorder prediction | 709 | 724 | - | - | |
| Pvu3g1204 | 930 | PANTHER | DNA HELICASE | 134 | 920 | - | - | |
| Pvu3g1204 | 930 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 134 | 920 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pvu3g1204 | 930 | Gene3D | - | 343 | 393 | - | - | |
| Pvu3g1204 | 930 | ProSiteProfiles | MCM family domain profile. | 495 | 701 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pvu3g1204 | 930 | Pfam | MCM AAA-lid domain | 742 | 825 | IPR041562 | - | |
| Pvu3g1204 | 930 | Pfam | Mini-chromosome maintenance protein 2 | 37 | 189 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pvu3g1204 | 930 | Gene3D | - | 208 | 312 | - | - | |
| Pvu3g1204 | 930 | Pfam | MCM N-terminal domain | 216 | 309 | IPR027925 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu3g1204 | Pvu-Chr3 | 28929263 | 28934582 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu3g1204 | 20 | 926 | Core DNA Replication Machinery Family | AT1G44900 | 75.136 | 0.0 | 1363 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu3g1204 | K02540 | - | gmx:100799441 | 1711.81 |