Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1198 ATGCTCCTTGCATTGATGAATCTGTTCTCGCTTTGTTGGAAGCCGTTCGGGCGCGATGCTGATCGATTGGATTCCATCGGAGTTATCGGGAGCACACTCGCTGGGAGAGAAGGCAGAGACGGCTTGCTCTGGTTCCGCGACGTCGGAAAATATGCCTCCGGTGATTTCTCCATGGCCGTCGTTCAGGCCAACCAGGTTCTCGAAGACCAGAGCCAGATCGAGTCCGGTCCTCTCGGTACCTTCGTCGGCATATACGACGGTCACGGAGGGCCTGACGCCTCCAGATACGTTTGCGATCACTTGTTTCGCCATTTTCAAGCAACATCGGCCGAGTCACGCGGGGTTGTGACAGCGGAGACAATTGAAAGAGCATTCCGCCAGACGGAAGAGGGATACACGGCCCTCGTGTCAGCTTCCTGGAATGCTCGACCTCAAATAGCGGGCGCTGGGACCTGTTGTCTAGTGGGAGTGATATTTCAACAGACACTCTTTGTGGCAAACGTTGGAGATTCCCGTGTTGTATTGGGTAAGAAAGTTGGCAACACTGGAGGTATGGCTGCAATTCAGCTGTCTACGGAACACAATGCAAATCTTGAGGCTGTTAGACAGGAACTTAAAGAATTACACCCTCATGATCCTCAAATTGTTGTCCTCAAACATGGAGTGTGGAGAGTAAAAGGCATTATTCAGGTTTCTAGATCTATAGGTGACGTATATTTGAAACATGCAGAATTTAACCGGGAACCACTTAATGCAAAATTCAGACTTCCTGAACCGATGCACTTGCACATGCCTATCCTGAGTGCTAATCCCAGTATTCTTTCTCATCCTCTCCAACCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACTTGAGTAATGAAAAAGCTGTGGATATTGTAAACAGCAATCCACATGCGGGTAGTGCGAAGAGACTTATCAAGGCTGCCCTCCACGAAGCAGCAAGAAAACGAGAAATGCGGTATTCAGATCTTCGTAAGATTGACAAGAAGGTTCGACGCCATTTTCATGATGATATATCTGTTATTGTTTTATTCTTAAATCACGACCTTATTTCCAGAGGCACAGTGCTAGACTCGGCACTTTCACTTCGAAGCGCTCTCGATCACTGA 1146 0.4782 MLLALMNLFSLCWKPFGRDADRLDSIGVIGSTLAGREGRDGLLWFRDVGKYASGDFSMAVVQANQVLEDQSQIESGPLGTFVGIYDGHGGPDASRYVCDHLFRHFQATSAESRGVVTAETIERAFRQTEEGYTALVSASWNARPQIAGAGTCCLVGVIFQQTLFVANVGDSRVVLGKKVGNTGGMAAIQLSTEHNANLEAVRQELKELHPHDPQIVVLKHGVWRVKGIIQVSRSIGDVYLKHAEFNREPLNAKFRLPEPMHLHMPILSANPSILSHPLQPNDSFLIFASDGLWEHLSNEKAVDIVNSNPHAGSAKRLIKAALHEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFLNHDLISRGTVLDSALSLRSALDH* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1198 381 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Pvu3g1198 381 Gene3D - 47 366 IPR036457 -
Pvu3g1198 381 PANTHER ALPHABET, ISOFORM E-RELATED 3 381 - -
Pvu3g1198 381 CDD PP2Cc 56 358 IPR001932 -
Pvu3g1198 381 Pfam Protein phosphatase 2C 79 328 IPR001932 -
Pvu3g1198 381 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 3 381 - -
Pvu3g1198 381 SMART PP2C_4 42 356 IPR001932 -
Pvu3g1198 381 ProSiteProfiles PPM-type phosphatase domain profile. 55 358 IPR001932 -
Pvu3g1198 381 SUPERFAMILY PP2C-like 65 359 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1198 Pvu-Chr3 28862947 28867151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1198 1 378 PP2C-type Phosphatase Gene Family AT4G38520 57.881 1.10e-155 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1198 K01102 - gmx:100790813 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1198 3 28862947 28867151 Pvu3g1198 3 28862947 28867151 ECH
Pvu3g1198 3 28862947 28867151 Pvu6g1241 6 23371218 23379132 PCT