Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1187 ATGGGAACTCCACCAACGGATGAACTCGTGAAGAAGATCCAACAGTTAGAAGAAGGACACGCGCACTTGAAGCAAGAAATGTCAAAGCTCAAACTCTCCGATGTGAGACACGGACATCGCCAGAGGTCGCACTCCGTCTCTCCGCAGCGTTCCAGGTTGGGCGCTCCCCCGAGGAGGCGGACCGATGCACCGGCGGCTGCGTGGAAGAGAGGTTCGTGTTCCTTTAAACAATCCTCGCCTCTGCAGAGAGAGAGCCGCGGCGGCGGGGATCCTCAAATTCACGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGAAGGTGCTACTCCGCGCCGTGGTCCTTCCGCCGTGAACTTTACGGAACGACAGTATCTTAATATTTTGCAGTCAATGGGACAGTCTGTTCATATATTGGATCTTAACTGTCGCATAATATACTGGAACCGTAGTGCGGAAAATCTGTATGGTTATACAGCAGAGGAAGCTTTAGGGCGGGATGGGATTGAGCTGCTTGTAGACCCTCGGGATTTGGGCTTGGCCAATGATACAGTGAACCGTGTGATGGTGGGAGAGAATTGGACGGGGCAATTTCCGGTCAAGAATAAGATGGGGGAGAAGTTCTTAGCTGTAGCGACTAATACACCTTTCTATGATGATGATGGAAGCTTAGTTGGGATAATTTGTGTCTCTTGTGATTCACGGCCCTTTCTTGAAATGAAAGTTCCGATGTCTGGTGTAAGGAACACTGAGTCGGATTTGGACTCGGGTGGAACTCGATCTAGAAGTAGCATTACGAATAAACTTGGCATTGACACTCAGCAGCCACTTCAAGTTGCTATTGCGTCAAAAATTTCAAATTTGGCATCAAAGGTGAGTAACAAAGTAAGGTCAAGGATCTGGACGGGAGAAAATAATGTGGATCGTGAAGGTGGGAGCGGTGAAAGTCATAATTCTGAGCATAGTTTGTTGGAATCTGTTCTTTCGGACCAGAGAGAGGATGCTAATTCCAGTGGAGCTAGCACCCCCAGAGGTGATGTGCCACCGTTCCATTTTGGTGTGTTTTCTCATGGCGAAGAAAAATCCCAGGGAAAATCTTCGAGAGAGTCTGGTGACGAGAGTGAAGGAAAATCTATTCACAAGAGCATACCTGCTAAGGCTGAAGCCTGGATTCAAAGGAAAACATTATCATGGCCATGGAGAACAAAGGACCGAGAAGGTTCAGATGGATCAGAGGGAAGCAAAGTTCGTGCTACTGGGCCCTGGAGACAGAATGATCGAGAAAGTGAATCAGTTAATCAGAAGATTCTTTCTTCTGGCTTGAAGCAAGAAAGCCAGGGAGGTGAAAGTAATCGCCCTAATAACAATGAGGTTTCAGGATCCTGGTCCTCCTTTAATGTTAACAGCACAAGCAGTGCCAGCAGCTGTGGGAGTGCTGGCAGTTGTGCTGTCAATAATAAAGTGGATGTGGACACTGATTGCTTGGATTATGAAATTTTGTGGGAGGACCTGACAATTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTTTATCATGCTCTGTGGTATGGATCAGATGTTGCCGTTAAAGTTTTCTCAAAGCAAGAATATTCAGATGAATTGATACTGTCCTTCAGACAAGAGGTGTCTGTCATGAAAAGACTTCGACACCCAAATATTCTTCTCTTTATGGGGGCCGTGACTTCACCTCAACGTCTCTGCATCGTGACAGAGTTTCTCCCGCGTGGAAGCTTGTGCCGCTTGTTACACAGAAACACTTCTAAACTTGACTGGAGACGGAGAGTTCATATGGCCTTGGATATTGCACGGGGCGTAAATTATCTTCATCATTCTAACCCACCTATCATCCACAGAGATTTGAAGTCTTCAAATCTTCTAGTTGATAAGAACTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGAGTTAAGCATGAAACATATCTCACAACTAAGACTGGAAGGGGCACGCCTCAATGGATGGCACCCGAAGTTCTTCGTAATGAACCCTCCGATGAGAAATCTGACGTTTATAGCTTTGGAGTGATATTATGGGAAATTGCAACTGAAAAGATACCTTGGGATAATCTCAACTCAATGCAGGTGATTGGAGCTGTAGGATTCATGAATCAACGGCTAGAAATTCCAAAAAATATCGATCCACGGTGGGCTTCTATAATTGAGAGCTGCTGGCACACCGATCCAGCAAGCCGGCCAACGTTCCCGGAACTACTTGATAGGCTTAGAGAGCTGCAAAAACAGTATGCCATTCAGTTCCAGGCAACCCGATCCGCCAGCAAGGAAAGTACCCAAAAAGAGTCCTAG 2352 0.4711 MGTPPTDELVKKIQQLEEGHAHLKQEMSKLKLSDVRHGHRQRSHSVSPQRSRLGAPPRRRTDAPAAAWKRGSCSFKQSSPLQRESRGGGDPQIHGGGGGGGGGGGGGEGATPRRGPSAVNFTERQYLNILQSMGQSVHILDLNCRIIYWNRSAENLYGYTAEEALGRDGIELLVDPRDLGLANDTVNRVMVGENWTGQFPVKNKMGEKFLAVATNTPFYDDDGSLVGIICVSCDSRPFLEMKVPMSGVRNTESDLDSGGTRSRSSITNKLGIDTQQPLQVAIASKISNLASKVSNKVRSRIWTGENNVDREGGSGESHNSEHSLLESVLSDQREDANSSGASTPRGDVPPFHFGVFSHGEEKSQGKSSRESGDESEGKSIHKSIPAKAEAWIQRKTLSWPWRTKDREGSDGSEGSKVRATGPWRQNDRESESVNQKILSSGLKQESQGGESNRPNNNEVSGSWSSFNVNSTSSASSCGSAGSCAVNNKVDVDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDELILSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTSKLDWRRRVHMALDIARGVNYLHHSNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRVKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWEIATEKIPWDNLNSMQVIGAVGFMNQRLEIPKNIDPRWASIIESCWHTDPASRPTFPELLDRLRELQKQYAIQFQATRSASKESTQKES* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1187 783 MobiDBLite consensus disorder prediction 432 464 - -
Pvu3g1187 783 ProSiteProfiles PAS repeat profile. 122 193 IPR000014 -
Pvu3g1187 783 CDD PAS 133 234 IPR000014 -
Pvu3g1187 783 MobiDBLite consensus disorder prediction 318 344 - -
Pvu3g1187 783 MobiDBLite consensus disorder prediction 304 464 - -
Pvu3g1187 783 Gene3D Phosphorylase Kinase; domain 1 498 582 - -
Pvu3g1187 783 SUPERFAMILY PYP-like sensor domain (PAS domain) 128 231 IPR035965 -
Pvu3g1187 783 TIGRFAM sensory_box: PAS domain S-box protein 123 231 IPR000014 -
Pvu3g1187 783 Pfam Protein tyrosine and serine/threonine kinase 505 757 IPR001245 GO:0004672|GO:0006468
Pvu3g1187 783 PRINTS Tyrosine kinase catalytic domain signature 579 592 IPR001245 GO:0004672|GO:0006468
Pvu3g1187 783 PRINTS Tyrosine kinase catalytic domain signature 618 636 IPR001245 GO:0004672|GO:0006468
Pvu3g1187 783 PRINTS Tyrosine kinase catalytic domain signature 665 675 IPR001245 GO:0004672|GO:0006468
Pvu3g1187 783 PRINTS Tyrosine kinase catalytic domain signature 684 706 IPR001245 GO:0004672|GO:0006468
Pvu3g1187 783 PRINTS Tyrosine kinase catalytic domain signature 728 750 IPR001245 GO:0004672|GO:0006468
Pvu3g1187 783 SMART serkin_6 505 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1187 783 Gene3D Transferase(Phosphotransferase) domain 1 583 783 - -
Pvu3g1187 783 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Pvu3g1187 783 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 27 782 - -
Pvu3g1187 783 MobiDBLite consensus disorder prediction 31 117 - -
Pvu3g1187 783 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 27 782 - -
Pvu3g1187 783 MobiDBLite consensus disorder prediction 249 270 - -
Pvu3g1187 783 MobiDBLite consensus disorder prediction 399 413 - -
Pvu3g1187 783 ProSiteProfiles Protein kinase domain profile. 505 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1187 783 SUPERFAMILY Protein kinase-like (PK-like) 494 757 IPR011009 -
Pvu3g1187 783 Pfam PAS fold 125 231 IPR013767 GO:0006355
Pvu3g1187 783 Gene3D PAS domain 134 236 - -
Pvu3g1187 783 MobiDBLite consensus disorder prediction 250 270 - -
Pvu3g1187 783 SMART pas_2 124 191 IPR000014 -
Pvu3g1187 783 CDD STKc_MAP3K-like 511 757 - -
Pvu3g1187 783 MobiDBLite consensus disorder prediction 362 383 - -
Pvu3g1187 783 Coils Coil 6 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1187 Pvu-Chr3 28604828 28612300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1187 1 774 MAP Kinase Kinase Kinase AT3G06620 59.010 0.0 931
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Pvu3g1187 PK_Tyr_Ser-Thr 5.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1187 - - pvu:PHAVU_003G114400g 1487.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1187 3 28604828 28612300 Pvu6g1238 6 23326665 23332251 PCT