Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1162 ATGGCGAATAACTTGGCGGCGCAACTTGTTGGTTCAGAGATACATGGATTCCACACATTGCAAGATTTGGATGTGAGGAGCATTATGGAGGAAGCGAGAACCAGATGGCTTCGTCCCAATGAAATCCATGCCATGCTGTGTAATTACAAGTATTTTCCCATTAATGTCAAGCCAGTGAATTTGCCAAAAAGTGGTACTATTGTCTTATTTGATCGTAAGATGCTTAGGAACTTTAGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGGAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATCCATGTATATTATGCACATGGTCAGGATAACCCAAATTTTGTGCGAAGATGTTATTGGCTGCTTGATAAGAGCATGGAACACATAGTCCTTGTTCATTATCGTGAAATACAAGAGATGCAAGGTTCTCCTGTCACTCCTGTAAATTCACACTCCAGTTCTGTCTCTGATCCCCCTGCACCATGGGCTGTATTAGAAGAAATAGATTCAGGGACCACAACCACATATGCTGGTGACATGAGTGACAATGTAAAAGACAAAAGTCATGAACTGAGACTTCATGAGATTAATACGCTTGAGTGGGATGACCTAGTGGATGCAAATGATCATGATGCCTCTACCATGCCTAATGGAGACACTGTTCCATATTTTAATCAACAAGATCAAACTTTACTAAATGACAGTTTCAGCAATGTAGTCAACAATCCATCTGGAGAAATTTCTTCTTTTAATTGTCTTCCTCAGCCAATTGCCGGGACCAACAGTGTTACTTACAATTTTTCAGAAAGTGCTAAGCTTCAGATGATGGGCAATCAAGCAAATCCAAATGAGCAGAGGAATAATATTGGTTCTTTAAGTGCTGGTTCCTTGGACCCTTTGGTCAATGATAGATTGCAAAGTCAGGGAAGTTTTGGAATGTGGGTGAATCACATGATGTCTGATTCATCATGTTCAGTAGATGACCCAGCTCTTGAGTCACCAGTTTCATCCGTTCATGAATCATATTTGTCTCTGGGAGTGGATGGTCAGCAATTTTGTCAGCCAGAACAAGTATTTACTATCACTGATGTATCCCCTACATGGGTGTCTTCCACTGAGACATCAAAGGTCCTGGTGACTGGATTCTTTCATAAGGATTATATGCACCTTTCAAAGTCCAATCTATTATGTGTCTGTGGTGATGTTAGCGTTCCTGCAGAAATTGTTCAGGTTGGATTCTACCGGTGCTGGGTACCACCACATTCGCCAGGAATCGTGAATCTCTTCTTGAGTTTTGATGGCCACAAGCCTATTAGCCAAGTTGTTAATTTTGAATATCGTACTCTTGTCTTGCATGATCCTACAGCTGCAATGGAAGAGAATAGCAATTGGGATGAGTTTCGACTACAAATGAGGCTTTCTTATTTGCTCTTTAATAAACAACTGAGCCTAGATGTTATATCCTGTAAAGTATCACCTAATAGACTTAAGGAGGCTAGACAATTCGCCCTCAGAACATCATTTATTTCAAATAGTTGGCAGTATTTAATCAAGTCAACTGAAGACCACCAGATTCCATTTTCAGAAGCAAAAGATGCTCTCTTTGGAATTGCATTGAAAAACAGACTAAGGGAATGGCTTTTGGAAAGAATTGTTCTAGGCTACAAGACTACTGAGTATGATTCACATGGCCAAAGTGTAATCCATTTGTGTGCAATTTTGGGATATACTTGGGCTGTTTCCTTATTTTCATGGTCAGGCTTGTCACTGGATTTCCGTGATAGATTTGGATGGACAGCTCTTCATTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAGCTCTGCTGTCTGCTGGGGCAAAGTCAAATTTGGTGACTGATCCTACGCAAAAAAATCCTAGTGGTTGCACTGCTGCTGATCTTGCTTATATGAAGGGTCATGATGGCTTAGCAGCTTATCTTTCAGAAAAATCTCTGGTTCAGCAATTTAATGACATGAGCTTAGCTGGAAATATCAGCGGCACATTAGAAAATAACACAACTGATGCAATAAATTCTGCAAACCTTACTGATGACCAGCAAAACCTGAGGGATACACTGGCAGCTTACCGAACTGCTGCTGACGCAGCTGCCCGCATACAGACTGCATTTAGGGAGCACAATCTAAAACTGAGAACTAACGCAGTTATGTCTTCCAATCCAGAGGCTGAAGCACGCAAAATAGTTGCAGCAATGAAAATTCAGCATGCCTTTAGGAACTTCGAGACAAAGAAAATGATGGGAGCTGCTGCTCGCATTCAGTGTACATTCCGTACATGGAAGATTCGGAAAGAATTTCTCCTCATGCGTCGTCAGGCTGTTAAAATTCAAGCTGCTTTCCGGTGCTTTCAACTGCGGAAGCATTATCGCCAAATTCTTTGGTCTGTAAGTGTGGTTGAGAAAGCAGTGCTGCGTTGGCGGTTGAAGAGAAGGGGTTTTCGAGGGCTCCAGGTCAGAACTGTTGAGGTGGGAACCGGAGATCAGGATAAGGAAAGTGTTGTAGAGGAGGAATTCTTTCAGACTGGTAGGAGACAGGCTGAAGAACGTGTTGAGAGATCTGTGGTGAGGGTTCAGGCTATGTTCCGATCCAAGAAAGCACAAGAAGAGTATAGGAGGATGAAATTAGCTCTAGATCAAGCAAAGCTGGATCGGGAATTCGAAGAACTTCTTAGTACTGAAGTTGATATGGAACTGAAGGCATAG 2769 0.4182 MANNLAAQLVGSEIHGFHTLQDLDVRSIMEEARTRWLRPNEIHAMLCNYKYFPINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSMEHIVLVHYREIQEMQGSPVTPVNSHSSSVSDPPAPWAVLEEIDSGTTTTYAGDMSDNVKDKSHELRLHEINTLEWDDLVDANDHDASTMPNGDTVPYFNQQDQTLLNDSFSNVVNNPSGEISSFNCLPQPIAGTNSVTYNFSESAKLQMMGNQANPNEQRNNIGSLSAGSLDPLVNDRLQSQGSFGMWVNHMMSDSSCSVDDPALESPVSSVHESYLSLGVDGQQFCQPEQVFTITDVSPTWVSSTETSKVLVTGFFHKDYMHLSKSNLLCVCGDVSVPAEIVQVGFYRCWVPPHSPGIVNLFLSFDGHKPISQVVNFEYRTLVLHDPTAAMEENSNWDEFRLQMRLSYLLFNKQLSLDVISCKVSPNRLKEARQFALRTSFISNSWQYLIKSTEDHQIPFSEAKDALFGIALKNRLREWLLERIVLGYKTTEYDSHGQSVIHLCAILGYTWAVSLFSWSGLSLDFRDRFGWTALHWAAYCGREKMVAALLSAGAKSNLVTDPTQKNPSGCTAADLAYMKGHDGLAAYLSEKSLVQQFNDMSLAGNISGTLENNTTDAINSANLTDDQQNLRDTLAAYRTAADAAARIQTAFREHNLKLRTNAVMSSNPEAEARKIVAAMKIQHAFRNFETKKMMGAAARIQCTFRTWKIRKEFLLMRRQAVKIQAAFRCFQLRKHYRQILWSVSVVEKAVLRWRLKRRGFRGLQVRTVEVGTGDQDKESVVEEEFFQTGRRQAEERVERSVVRVQAMFRSKKAQEEYRRMKLALDQAKLDREFEELLSTEVDMELKA* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1162 922 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Pvu3g1162 922 SUPERFAMILY Ankyrin repeat 551 667 IPR036770 -
Pvu3g1162 922 ProSiteProfiles IQ motif profile. 873 901 IPR000048 GO:0005515
Pvu3g1162 922 Gene3D Immunoglobulins 339 457 IPR013783 -
Pvu3g1162 922 SMART CG_1_2 28 146 IPR005559 GO:0003677
Pvu3g1162 922 Gene3D - 534 674 IPR036770 -
Pvu3g1162 922 ProSiteProfiles Ankyrin repeat profile. 604 636 IPR002110 GO:0005515
Pvu3g1162 922 ProSiteProfiles IQ motif profile. 768 797 IPR000048 GO:0005515
Pvu3g1162 922 Pfam Ankyrin repeats (3 copies) 553 632 IPR002110 GO:0005515
Pvu3g1162 922 Pfam IQ calmodulin-binding motif 793 812 IPR000048 GO:0005515
Pvu3g1162 922 Pfam IQ calmodulin-binding motif 771 788 IPR000048 GO:0005515
Pvu3g1162 922 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Pvu3g1162 922 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 15 921 - -
Pvu3g1162 922 SUPERFAMILY E set domains 368 455 IPR014756 -
Pvu3g1162 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 819 IPR027417 -
Pvu3g1162 922 Gene3D - 765 815 - -
Pvu3g1162 922 ProSiteProfiles Ankyrin repeat region circular profile. 604 632 - -
Pvu3g1162 922 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 921 - -
Pvu3g1162 922 Coils Coil 885 905 - -
Pvu3g1162 922 SMART ANK_2a 643 674 IPR002110 GO:0005515
Pvu3g1162 922 SMART ANK_2a 604 633 IPR002110 GO:0005515
Pvu3g1162 922 ProSiteProfiles IQ motif profile. 791 819 IPR000048 GO:0005515
Pvu3g1162 922 SMART iq_5 871 893 IPR000048 GO:0005515
Pvu3g1162 922 SMART iq_5 790 812 IPR000048 GO:0005515
Pvu3g1162 922 SMART iq_5 767 789 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1162 Pvu-Chr3 28187173 28194709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1162 28 905 CAMTA Transcription Factor Family AT3G16940 54.143 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Pvu3g1162 CG-1 2.2e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1162 K21596 - gmx:100793970 1576.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1162 3 28187173 28194709 Pvu3g1162 3 28187173 28194709 ECH
Pvu3g1162 3 28187173 28194709 Pvu9g2629 9 36734077 36745918 PCT